Literature DB >> 23295485

Crystallization and preliminary X-ray analysis of human MTH1 with a homogeneous N-terminus.

Yukari Koga1, Miyuki Inazato, Teruya Nakamura, Chie Hashikawa, Mami Chirifu, Asuka Michi, Taku Yamashita, Sachiko Toma, Akihiko Kuniyasu, Shinji Ikemizu, Yusaku Nakabeppu, Yuriko Yamagata.   

Abstract

Human MTH1 (hMTH1) is an enzyme that hydrolyses several oxidized purine nucleoside triphosphates to their corresponding nucleoside monophosphates. Crystallographic studies have shown that the accurate mode of interaction between 8-oxoguanine and hMTH1 cannot be understood without determining the positions of the H atoms, as can be observed in neutron and/or ultrahigh-resolution X-ray diffraction studies. The hMTH1 protein prepared in the original expression system from Escherichia coli did not appear to be suitable for obtaining high-quality crystals because the hMTH1 protein had heterogeneous N-termini of Met1 and Gly2 that resulted from N-terminal Met excision by methionine aminopeptidase from the E. coli host. To obtain homogeneous hMTH1, the Gly at the second position was replaced by Lys. As a result, mutant hMTH1 protein [hMTH1(G2K)] with a homogeneous N-terminus could be prepared and high-quality crystals which diffracted to near 1.1 Å resolution using synchrotron radiation were produced. The new crystals belonged to space group P2(1)2(1)2(1), with unit-cell parameters a = 46.36, b = 47.58, c = 123.89 Å.

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Year:  2012        PMID: 23295485      PMCID: PMC3539702          DOI: 10.1107/S1744309112048002

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  28 in total

1.  A molecular basis for the selective recognition of 2-hydroxy-dATP and 8-oxo-dGTP by human MTH1.

Authors:  Yasunari Sakai; Masato Furuichi; Masayuki Takahashi; Masaki Mishima; Shigenori Iwai; Masahiro Shirakawa; Yusaku Nakabeppu
Journal:  J Biol Chem       Date:  2001-12-27       Impact factor: 5.157

2.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

3.  Human MTH1 protein hydrolyzes the oxidized ribonucleotide, 2-hydroxy-ATP.

Authors:  K Fujikawa; H Kamiya; H Yakushiji; Y Nakabeppu; H Kasai
Journal:  Nucleic Acids Res       Date:  2001-01-15       Impact factor: 16.971

4.  Human MTH3 (NUDT18) protein hydrolyzes oxidized forms of guanosine and deoxyguanosine diphosphates: comparison with MTH1 and MTH2.

Authors:  Yasumitsu Takagi; Daiki Setoyama; Riyoko Ito; Hiroyuki Kamiya; Yuriko Yamagata; Mutsuo Sekiguchi
Journal:  J Biol Chem       Date:  2012-05-03       Impact factor: 5.157

5.  A novel mechanism for preventing mutations caused by oxidation of guanine nucleotides.

Authors:  Toru Ishibashi; Hiroshi Hayakawa; Mutsuo Sekiguchi
Journal:  EMBO Rep       Date:  2003-05       Impact factor: 8.807

Review 6.  Chemistry-based studies on oxidative DNA damage: formation, repair, and mutagenesis.

Authors:  Hiroshi Kasai
Journal:  Free Radic Biol Med       Date:  2002-08-15       Impact factor: 7.376

7.  Hydrolytic elimination of a mutagenic nucleotide, 8-oxodGTP, by human 18-kilodalton protein: sanitization of nucleotide pool.

Authors:  J Y Mo; H Maki; M Sekiguchi
Journal:  Proc Natl Acad Sci U S A       Date:  1992-11-15       Impact factor: 11.205

8.  Structure of human MTH1, a Nudix family hydrolase that selectively degrades oxidized purine nucleoside triphosphates.

Authors:  Masaki Mishima; Yasunari Sakai; Noriyuki Itoh; Hiroyuki Kamiya; Masato Furuichi; Masayuki Takahashi; Yuriko Yamagata; Shigenori Iwai; Yusaku Nakabeppu; Masahiro Shirakawa
Journal:  J Biol Chem       Date:  2004-05-07       Impact factor: 5.157

9.  MutT protein specifically hydrolyses a potent mutagenic substrate for DNA synthesis.

Authors:  H Maki; M Sekiguchi
Journal:  Nature       Date:  1992-01-16       Impact factor: 49.962

10.  Empirical relationships between protein structure and carboxyl pKa values in proteins.

Authors:  William R Forsyth; Jan M Antosiewicz; Andrew D Robertson
Journal:  Proteins       Date:  2002-08-01
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  2 in total

1.  Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase.

Authors:  Teruya Nakamura; Yuriko Yamagata
Journal:  Proc Natl Acad Sci U S A       Date:  2022-05-20       Impact factor: 12.779

2.  Structural and Kinetic Studies of the Human Nudix Hydrolase MTH1 Reveal the Mechanism for Its Broad Substrate Specificity.

Authors:  Shaimaa Waz; Teruya Nakamura; Keisuke Hirata; Yukari Koga-Ogawa; Mami Chirifu; Takao Arimori; Taro Tamada; Shinji Ikemizu; Yusaku Nakabeppu; Yuriko Yamagata
Journal:  J Biol Chem       Date:  2016-12-29       Impact factor: 5.157

  2 in total

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