Literature DB >> 23295478

Structure of Pisum sativum Rubisco with bound ribulose 1,5-bisphosphate.

Peter C Loewen1, Allison L Didychuk, Jacek Switala, Rosa Perez-Luque, Ignacio Fita, Michele C Loewen.   

Abstract

The first structure of a ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) from a pulse crop is reported. Rubisco was purified from Pisum sativum (garden pea) and diffraction-quality crystals were obtained by hanging-drop vapour diffusion in the presence of the substrate ribulose 1,5-bisphosphate. X-ray diffraction data were recorded to 2.20 Å resolution from a single crystal at the Canadian Light Source. The overall quaternary structure of non-activated P. sativum Rubisco highlights the conservation of the form I Rubisco hexadecameric complex. The electron density places the substrate in the active site at the interface of the large-subunit dimers. Lys201 in the active site is not carbamylated as expected for this non-activated structure. Some heterogeneity in the small-subunit sequence is noted, as well as possible variations in the conformation and contacts of ribulose 1,5-bisphosphate in the large-subunit active sites. Overall, the active-site conformation most closely correlates with the `closed' conformation observed in other substrate/inhibitor-bound Rubisco structures.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 23295478      PMCID: PMC3539695          DOI: 10.1107/S1744309112047549

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  23 in total

1.  Structure of a product complex of spinach ribulose-1,5-bisphosphate carboxylase/oxygenase.

Authors:  T C Taylor; I Andersson
Journal:  Biochemistry       Date:  1997-04-01       Impact factor: 3.162

2.  Orderly disposition of heterogeneous small subunits in D-ribulose-1,5-bisphosphate carboxylase/oxygenase from spinach.

Authors:  N Shibata; T Inoue; K Fukuhara; Y Nagara; R Kitagawa; S Harada; N Kasai; K Uemura; K Kato; A Yokota; Y Kai
Journal:  J Biol Chem       Date:  1996-10-25       Impact factor: 5.157

3.  Fallover of Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase Activity : Decarbamylation of Catalytic Sites Depends on pH.

Authors:  G Zhu; R G Jensen
Journal:  Plant Physiol       Date:  1991-12       Impact factor: 8.340

4.  A common structural basis for the inhibition of ribulose 1,5-bisphosphate carboxylase by 4-carboxyarabinitol 1,5-bisphosphate and xylulose 1,5-bisphosphate.

Authors:  T C Taylor; M D Fothergill; I Andersson
Journal:  J Biol Chem       Date:  1996-12-20       Impact factor: 5.157

5.  iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM.

Authors:  T Geoff G Battye; Luke Kontogiannis; Owen Johnson; Harold R Powell; Andrew G W Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

6.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

Review 7.  Structure and function of Rubisco.

Authors:  Inger Andersson; Anders Backlund
Journal:  Plant Physiol Biochem       Date:  2008-01-12       Impact factor: 4.270

Review 8.  Catalysis and regulation in Rubisco.

Authors:  Inger Andersson
Journal:  J Exp Bot       Date:  2008-04-15       Impact factor: 6.992

9.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

View more
  3 in total

1.  Application of an improved proteomics method for abundant protein cleanup: molecular and genomic mechanisms study in plant defense.

Authors:  Yixiang Zhang; Peng Gao; Zhuo Xing; Shumei Jin; Zhide Chen; Lantao Liu; Nasie Constantino; Xinwang Wang; Weibing Shi; Joshua S Yuan; Susie Y Dai
Journal:  Mol Cell Proteomics       Date:  2013-08-13       Impact factor: 5.911

2.  Identification of Interactions between Abscisic Acid and Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase.

Authors:  Marek M Galka; Nandhakishore Rajagopalan; Leann M Buhrow; Ken M Nelson; Jacek Switala; Adrian J Cutler; David R J Palmer; Peter C Loewen; Suzanne R Abrams; Michele C Loewen
Journal:  PLoS One       Date:  2015-07-21       Impact factor: 3.240

3.  Structure of Rubisco from Arabidopsis thaliana in complex with 2-carboxyarabinitol-1,5-bisphosphate.

Authors:  Karin Valegård; Dirk Hasse; Inger Andersson; Laura H Gunn
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-01-01       Impact factor: 7.652

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.