Literature DB >> 23288935

Efficient targeted mutagenesis in medaka using custom-designed transcription activator-like effector nucleases.

Satoshi Ansai1, Tetsushi Sakuma, Takashi Yamamoto, Hiroyoshi Ariga, Norihito Uemura, Ryosuke Takahashi, Masato Kinoshita.   

Abstract

Transcription activator-like effector nucleases (TALENs) have become powerful tools for targeted genome editing. Here we demonstrate efficient targeted mutagenesis in medaka (Oryzias latipes), which serves as an excellent vertebrate model for genetics and genomics. We designed and constructed a pair of TALENs targeting the medaka DJ-1 gene, a homolog of human DJ-1 (PARK7). These TALENs induced a number of insertions and deletions in the injected embryos with extremely high efficiency. This induction of mutations occurred in a dose-dependent manner. All screened G0 fish injected with the TALENs transmitted the TALEN-induced mutations to the next generation with high efficiency (44-100%). We also confirmed that these TALENs induced site-specific mutations because none of the mutations were found at potential off-target sites. In addition, the DJ-1 protein was lost in DJ-1(Δ7/Δ7) fish that carried a TALEN-induced frameshift mutation in both alleles. We also investigated the effect of the N- and C-terminal regions of the transcription activator-like (TAL) effector domain on the gene-disrupting activity of DJ1-TALENs and found that 287 amino acids at the N terminus and 63 amino acids at the C terminus of the TAL domain exhibited the highest disrupting activity in the injected embryos. Our results suggest that TALENs enable us to rapidly and efficiently establish knockout medaka strains. This is the first report of targeted mutagenesis in medaka using TALENs. The TALEN technology will expand the potential of medaka as a model system for genetics and genomics.

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Year:  2013        PMID: 23288935      PMCID: PMC3583995          DOI: 10.1534/genetics.112.147645

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  39 in total

1.  Efficient and specific modifications of the Drosophila genome by means of an easy TALEN strategy.

Authors:  Jiyong Liu; Changqing Li; Zhongsheng Yu; Peng Huang; Honggang Wu; Chuanxian Wei; Nannan Zhu; Yan Shen; Yixu Chen; Bo Zhang; Wu-Min Deng; Renjie Jiao
Journal:  J Genet Genomics       Date:  2012-05-08       Impact factor: 4.275

2.  Targeted disruption of exogenous EGFP gene in medaka using zinc-finger nucleases.

Authors:  Satoshi Ansai; Hiroshi Ochiai; Yuta Kanie; Yasuhiro Kamei; Yuki Gou; Takeshi Kitano; Takashi Yamamoto; Masato Kinoshita
Journal:  Dev Growth Differ       Date:  2012-05-30       Impact factor: 2.053

3.  A simple cipher governs DNA recognition by TAL effectors.

Authors:  Matthew J Moscou; Adam J Bogdanove
Journal:  Science       Date:  2009-12-11       Impact factor: 47.728

4.  Knockout rats generated by embryo microinjection of TALENs.

Authors:  Laurent Tesson; Claire Usal; Séverine Ménoret; Elo Leung; Brett J Niles; Séverine Remy; Yolanda Santiago; Anna I Vincent; Xiangdong Meng; Lei Zhang; Philip D Gregory; Ignacio Anegon; Gregory J Cost
Journal:  Nat Biotechnol       Date:  2011-08-05       Impact factor: 54.908

5.  Efficient targeted gene disruption in Xenopus embryos using engineered transcription activator-like effector nucleases (TALENs).

Authors:  Yong Lei; Xiaogang Guo; Yun Liu; Yang Cao; Yi Deng; Xiongfeng Chen; Christopher H K Cheng; Igor B Dawid; Yonglong Chen; Hui Zhao
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-08       Impact factor: 11.205

Review 6.  Medaka genomics: a bridge between mutant phenotype and gene function.

Authors:  Kiyoshi Naruse; Hiroshi Hori; Nobuyoshi Shimizu; Yuji Kohara; Hiroyuki Takeda
Journal:  Mech Dev       Date:  2004-07       Impact factor: 1.882

7.  Highly efficient generation of heritable zebrafish gene mutations using homo- and heterodimeric TALENs.

Authors:  Lindsay Cade; Deepak Reyon; Woong Y Hwang; Shengdar Q Tsai; Samir Patel; Cyd Khayter; J Keith Joung; Jeffry D Sander; Randall T Peterson; Jing-Ruey Joanna Yeh
Journal:  Nucleic Acids Res       Date:  2012-06-07       Impact factor: 16.971

8.  FLASH assembly of TALENs for high-throughput genome editing.

Authors:  Deepak Reyon; Shengdar Q Tsai; Cyd Khayter; Jennifer A Foden; Jeffry D Sander; J Keith Joung
Journal:  Nat Biotechnol       Date:  2012-05       Impact factor: 54.908

9.  Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting.

Authors:  Tomas Cermak; Erin L Doyle; Michelle Christian; Li Wang; Yong Zhang; Clarice Schmidt; Joshua A Baller; Nikunj V Somia; Adam J Bogdanove; Daniel F Voytas
Journal:  Nucleic Acids Res       Date:  2011-04-14       Impact factor: 16.971

10.  A novel TALE nuclease scaffold enables high genome editing activity in combination with low toxicity.

Authors:  Claudio Mussolino; Robert Morbitzer; Fabienne Lütge; Nadine Dannemann; Thomas Lahaye; Toni Cathomen
Journal:  Nucleic Acids Res       Date:  2011-08-03       Impact factor: 16.971

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  44 in total

1.  Parameters and efficiency of direct gene disruption by zinc finger nucleases in medaka embryos.

Authors:  Xi Zhang; Guijun Guan; Jianbin Chen; Kiyoshi Naruse; Yunhan Hong
Journal:  Mar Biotechnol (NY)       Date:  2013-10-23       Impact factor: 3.619

2.  Evolution of transcriptional enhancers and animal diversity.

Authors:  Marcelo Rubinstein; Flávio S J de Souza
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-11-11       Impact factor: 6.237

3.  Sexually dimorphic role of oxytocin in medaka mate choice.

Authors:  Saori Yokoi; Kiyoshi Naruse; Yasuhiro Kamei; Satoshi Ansai; Masato Kinoshita; Mari Mito; Shintaro Iwasaki; Shuntaro Inoue; Teruhiro Okuyama; Shinichi Nakagawa; Larry J Young; Hideaki Takeuchi
Journal:  Proc Natl Acad Sci U S A       Date:  2020-02-18       Impact factor: 11.205

4.  Genome Editing in Astyanax mexicanus Using Transcription Activator-like Effector Nucleases (TALENs).

Authors:  Johanna E Kowalko; Li Ma; William R Jeffery
Journal:  J Vis Exp       Date:  2016-06-20       Impact factor: 1.355

5.  Efficient knockout of transplanted green fluorescent protein gene in medaka using TALENs.

Authors:  Chao Qiu; Bin Cheng; Yunsheng Zhang; Rong Huang; Lanjie Liao; Yongming Li; Daji Luo; Wei Hu; Yaping Wang
Journal:  Mar Biotechnol (NY)       Date:  2014-07-24       Impact factor: 3.619

Review 6.  A new model army: Emerging fish models to study the genomics of vertebrate Evo-Devo.

Authors:  Ingo Braasch; Samuel M Peterson; Thomas Desvignes; Braedan M McCluskey; Peter Batzel; John H Postlethwait
Journal:  J Exp Zool B Mol Dev Evol       Date:  2014-08-11       Impact factor: 2.656

7.  Gene replacement by zinc finger nucleases in medaka embryos.

Authors:  Guijun Guan; Xi Zhang; Kiyoshi Naruse; Yoshitaka Nagahama; Yunhan Hong
Journal:  Mar Biotechnol (NY)       Date:  2014-08-06       Impact factor: 3.619

8.  Oxidative Stress Causes Masculinization of Genetically Female Medaka Without Elevating Cortisol.

Authors:  Koki Mukai; Seiji Hara; Konosuke Sakima; Ryo Nozu; Takashi Yazawa; Takeshi Kitano
Journal:  Front Endocrinol (Lausanne)       Date:  2022-06-16       Impact factor: 6.055

9.  Targeted mutagenesis of aryl hydrocarbon receptor 2a and 2b genes in Atlantic killifish (Fundulus heteroclitus).

Authors:  Neelakanteswar Aluru; Sibel I Karchner; Diana G Franks; Diane Nacci; Denise Champlin; Mark E Hahn
Journal:  Aquat Toxicol       Date:  2014-11-26       Impact factor: 4.964

10.  Fish is Fish: the use of experimental model species to reveal causes of skeletal diversity in evolution and disease.

Authors:  M P Harris; K Henke; M B Hawkins; P E Witten
Journal:  J Appl Ichthyol       Date:  2014-08-01       Impact factor: 0.892

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