Literature DB >> 23285592

Evaluating segmentation error without ground truth.

Timo Kohlberger1, Vivek Singh, Chris Alvino, Claus Bahlmann, Leo Grady.   

Abstract

The automatic delineation of the boundaries of organs and other anatomical structures is a key component of many medical image processing systems. In this paper we present a generic learning approach based on a novel space of segmentation features, which can be trained to predict the overlap error and Dice coefficient of an arbitrary organ segmentation without knowing the ground truth delineation. We show the regressor to be much stronger a predictor of these error metrics than the responses of probabilistic boosting classifiers trained on the segmentation boundary. The presented approach not only allows us to build reliable confidence measures and fidelity checks, but also to rank several segmentation hypotheses against each other during online usage of the segmentation algorithm in clinical practice.

Mesh:

Year:  2012        PMID: 23285592     DOI: 10.1007/978-3-642-33415-3_65

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  13 in total

1.  Cooperative strategy for a dynamic ensemble of classification models in clinical applications: the case of MRI vertebral compression fractures.

Authors:  Paola Casti; Arianna Mencattini; Marcello H Nogueira-Barbosa; Lucas Frighetto-Pereira; Paulo Mazzoncini Azevedo-Marques; Eugenio Martinelli; Corrado Di Natale
Journal:  Int J Comput Assist Radiol Surg       Date:  2017-06-14       Impact factor: 2.924

2.  Computer-Assisted Diagnosis System for Breast Cancer in Computed Tomography Laser Mammography (CTLM).

Authors:  Afsaneh Jalalian; Syamsiah Mashohor; Rozi Mahmud; Babak Karasfi; M Iqbal Saripan; Abdul Rahman Ramli
Journal:  J Digit Imaging       Date:  2017-12       Impact factor: 4.056

3.  Practical no-gold-standard evaluation framework for quantitative imaging methods: application to lesion segmentation in positron emission tomography.

Authors:  Abhinav K Jha; Esther Mena; Brian Caffo; Saeed Ashrafinia; Arman Rahmim; Eric Frey; Rathan M Subramaniam
Journal:  J Med Imaging (Bellingham)       Date:  2017-03-03

4.  A hybrid method for airway segmentation and automated measurement of bronchial wall thickness on CT.

Authors:  Ziyue Xu; Ulas Bagci; Brent Foster; Awais Mansoor; Jayaram K Udupa; Daniel J Mollura
Journal:  Med Image Anal       Date:  2015-05-14       Impact factor: 8.545

5.  Automatic Segmentation and Quantification of White and Brown Adipose Tissues from PET/CT Scans.

Authors:  Sarfaraz Hussein; Aileen Green; Arjun Watane; David Reiter; Xinjian Chen; Georgios Z Papadakis; Bradford Wood; Aaron Cypess; Medhat Osman; Ulas Bagci
Journal:  IEEE Trans Med Imaging       Date:  2016-12-06       Impact factor: 10.048

6.  Computer-assisted liver tumor surgery using a novel semiautomatic and a hybrid semiautomatic segmentation algorithm.

Authors:  Apollon Zygomalas; Dionissios Karavias; Dimitrios Koutsouris; Ioannis Maroulis; Dimitrios D Karavias; Konstantinos Giokas; Vasileios Megalooikonomou
Journal:  Med Biol Eng Comput       Date:  2015-08-26       Impact factor: 2.602

7.  Segmentation evaluation with sparse ground truth data: Simulating true segmentations as perfect/imperfect as those generated by humans.

Authors:  Jieyu Li; Jayaram K Udupa; Yubing Tong; Lisheng Wang; Drew A Torigian
Journal:  Med Image Anal       Date:  2021-01-26       Impact factor: 8.545

8.  Deep neural network ensemble for on-the-fly quality control-driven segmentation of cardiac MRI T1 mapping.

Authors:  Evan Hann; Iulia A Popescu; Qiang Zhang; Ricardo A Gonzales; Ahmet Barutçu; Stefan Neubauer; Vanessa M Ferreira; Stefan K Piechnik
Journal:  Med Image Anal       Date:  2021-03-11       Impact factor: 8.545

9.  Automated computer quantification of breast cancer in small-animal models using PET-guided MR image co-segmentation.

Authors:  Ulas Bagci; Gabriela Kramer-Marek; Daniel J Mollura
Journal:  EJNMMI Res       Date:  2013-07-05       Impact factor: 3.138

10.  SOAX: a software for quantification of 3D biopolymer networks.

Authors:  Ting Xu; Dimitrios Vavylonis; Feng-Ching Tsai; Gijsje H Koenderink; Wei Nie; Eddy Yusuf; Jian-Qiu Wu; Xiaolei Huang
Journal:  Sci Rep       Date:  2015-03-13       Impact factor: 4.379

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