| Literature DB >> 23284539 |
Fernando Rocha-Alonzo1, David Morales-Morales, Simón Hernández-Ortega, Reyna Reyes-Martínez, Miguel Parra-Hake.
Abstract
The crystal structure of the title compound, C(11)H(13)N(3)O(2), is stabilized by O-H⋯O hydrogen bonds, which link the mol-ecules into chains along [100].Entities:
Year: 2012 PMID: 23284539 PMCID: PMC3515319 DOI: 10.1107/S1600536812043802
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H13N3O2 | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 4276 reflections |
| θ = 2.6–25.2° | |
| µ = 0.09 mm−1 | |
| Prism, colourless | |
| 0.32 × 0.10 × 0.10 mm |
| Bruker SMART APEX CCD area-detector diffractometer | 1700 reflections with |
| Radiation source: fine-focus sealed tube | |
| Graphite monochromator | θmax = 25.4°, θmin = 2.6° |
| Detector resolution: 0.83 pixels mm-1 | |
| ω scans | |
| 9057 measured reflections | |
| 2000 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2000 reflections | (Δ/σ)max < 0.001 |
| 149 parameters | Δρmax = 0.11 e Å−3 |
| 1 restraint | Δρmin = −0.15 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.56004 (14) | 0.68985 (11) | 1.02583 (10) | 0.0584 (4) | |
| N1 | 0.87770 (16) | 0.64809 (13) | 0.79106 (11) | 0.0438 (4) | |
| O2 | 0.82337 (18) | 0.99854 (13) | 0.99816 (15) | 0.0797 (5) | |
| H2 | 0.885 (2) | 0.9362 (16) | 0.992 (2) | 0.096* | |
| N2 | 0.80536 (16) | 0.75426 (13) | 0.80106 (11) | 0.0430 (4) | |
| N3 | 0.70312 (14) | 0.76906 (12) | 0.88520 (11) | 0.0372 (3) | |
| C4 | 0.66320 (18) | 0.67321 (15) | 0.96026 (14) | 0.0386 (4) | |
| C4A | 0.75154 (18) | 0.55429 (16) | 0.95179 (13) | 0.0362 (4) | |
| C5 | 0.7338 (2) | 0.44941 (16) | 1.02537 (14) | 0.0469 (4) | |
| H5 | 0.6642 | 0.4546 | 1.0826 | 0.056* | |
| C6 | 0.8194 (2) | 0.33848 (17) | 1.01301 (16) | 0.0545 (5) | |
| H6 | 0.8081 | 0.2686 | 1.0623 | 0.065* | |
| C7 | 0.9226 (2) | 0.32979 (18) | 0.92741 (17) | 0.0568 (5) | |
| H7 | 0.9790 | 0.2535 | 0.9191 | 0.068* | |
| C8 | 0.94229 (19) | 0.43244 (17) | 0.85511 (16) | 0.0517 (5) | |
| H8 | 1.0127 | 0.4266 | 0.7985 | 0.062* | |
| C8A | 0.85625 (17) | 0.54564 (15) | 0.86684 (13) | 0.0382 (4) | |
| C9 | 0.62783 (18) | 0.89954 (14) | 0.88408 (15) | 0.0420 (4) | |
| H9 | 0.5594 | 0.9021 | 0.9476 | 0.050* | |
| C10 | 0.7406 (2) | 1.00892 (17) | 0.89991 (17) | 0.0553 (5) | |
| H10A | 0.8088 | 1.0088 | 0.8372 | 0.066* | |
| H10B | 0.6886 | 1.0927 | 0.8998 | 0.066* | |
| C11 | 0.5352 (2) | 0.91729 (17) | 0.77929 (16) | 0.0559 (5) | |
| H11A | 0.4838 | 1.0012 | 0.7833 | 0.067* | |
| H11B | 0.6015 | 0.9202 | 0.7156 | 0.067* | |
| C12 | 0.4222 (2) | 0.80997 (19) | 0.76146 (19) | 0.0765 (7) | |
| H12A | 0.3540 | 0.8081 | 0.8230 | 0.092* | |
| H12B | 0.4722 | 0.7266 | 0.7560 | 0.092* | |
| H12C | 0.3681 | 0.8266 | 0.6940 | 0.092* |
| O1 | 0.0643 (8) | 0.0449 (7) | 0.0660 (9) | 0.0042 (7) | 0.0294 (8) | 0.0035 (6) |
| N1 | 0.0471 (8) | 0.0409 (8) | 0.0434 (8) | 0.0020 (7) | 0.0101 (7) | −0.0012 (7) |
| O2 | 0.0754 (11) | 0.0612 (10) | 0.1026 (12) | 0.0097 (8) | −0.0365 (10) | −0.0201 (9) |
| N2 | 0.0473 (8) | 0.0401 (8) | 0.0415 (8) | 0.0014 (7) | 0.0075 (7) | 0.0013 (7) |
| N3 | 0.0410 (8) | 0.0319 (7) | 0.0387 (8) | 0.0029 (6) | 0.0047 (7) | 0.0002 (6) |
| C4 | 0.0396 (9) | 0.0364 (9) | 0.0398 (9) | −0.0021 (8) | 0.0043 (8) | −0.0018 (8) |
| C4A | 0.0380 (9) | 0.0339 (8) | 0.0366 (9) | −0.0030 (7) | −0.0024 (8) | −0.0013 (7) |
| C5 | 0.0532 (11) | 0.0426 (10) | 0.0448 (10) | −0.0046 (9) | −0.0004 (9) | 0.0019 (8) |
| C6 | 0.0638 (12) | 0.0392 (10) | 0.0604 (12) | −0.0009 (9) | −0.0109 (10) | 0.0083 (9) |
| C7 | 0.0538 (12) | 0.0365 (10) | 0.0800 (14) | 0.0100 (9) | −0.0071 (11) | −0.0013 (10) |
| C8 | 0.0435 (10) | 0.0465 (11) | 0.0651 (12) | 0.0061 (9) | 0.0060 (9) | −0.0089 (10) |
| C8A | 0.0379 (9) | 0.0352 (9) | 0.0416 (10) | −0.0030 (7) | −0.0017 (8) | −0.0044 (8) |
| C9 | 0.0457 (9) | 0.0337 (9) | 0.0467 (10) | 0.0058 (7) | 0.0009 (9) | −0.0019 (8) |
| C10 | 0.0587 (11) | 0.0362 (10) | 0.0711 (12) | 0.0034 (8) | −0.0022 (12) | −0.0055 (9) |
| C11 | 0.0648 (12) | 0.0429 (10) | 0.0600 (12) | 0.0132 (9) | −0.0118 (10) | −0.0007 (9) |
| C12 | 0.0765 (14) | 0.0602 (13) | 0.0927 (17) | 0.0111 (12) | −0.0357 (14) | −0.0133 (12) |
| O1—C4 | 1.2271 (18) | C7—C8 | 1.368 (2) |
| N1—N2 | 1.2636 (17) | C7—H7 | 0.9300 |
| N1—C8A | 1.396 (2) | C8—C8A | 1.391 (2) |
| O2—C10 | 1.399 (2) | C8—H8 | 0.9300 |
| O2—H2 | 0.846 (9) | C9—C10 | 1.514 (2) |
| N2—N3 | 1.3735 (18) | C9—C11 | 1.520 (2) |
| N3—C4 | 1.3745 (19) | C9—H9 | 0.9800 |
| N3—C9 | 1.4866 (19) | C10—H10A | 0.9700 |
| C4—C4A | 1.447 (2) | C10—H10B | 0.9700 |
| C4A—C8A | 1.390 (2) | C11—C12 | 1.503 (2) |
| C4A—C5 | 1.393 (2) | C11—H11A | 0.9700 |
| C5—C6 | 1.371 (2) | C11—H11B | 0.9700 |
| C5—H5 | 0.9300 | C12—H12A | 0.9600 |
| C6—C7 | 1.387 (3) | C12—H12B | 0.9600 |
| C6—H6 | 0.9300 | C12—H12C | 0.9600 |
| N2—N1—C8A | 120.17 (13) | C8—C8A—N1 | 118.22 (15) |
| C10—O2—H2 | 109.5 (17) | N3—C9—C10 | 110.42 (13) |
| N1—N2—N3 | 120.40 (12) | N3—C9—C11 | 111.17 (14) |
| N2—N3—C4 | 125.45 (12) | C10—C9—C11 | 112.49 (14) |
| N2—N3—C9 | 113.20 (12) | N3—C9—H9 | 107.5 |
| C4—N3—C9 | 121.22 (13) | C10—C9—H9 | 107.5 |
| O1—C4—N3 | 121.38 (14) | C11—C9—H9 | 107.5 |
| O1—C4—C4A | 124.93 (15) | O2—C10—C9 | 113.91 (15) |
| N3—C4—C4A | 113.68 (14) | O2—C10—H10A | 108.8 |
| C8A—C4A—C5 | 119.70 (15) | C9—C10—H10A | 108.8 |
| C8A—C4A—C4 | 118.29 (14) | O2—C10—H10B | 108.8 |
| C5—C4A—C4 | 122.01 (15) | C9—C10—H10B | 108.8 |
| C6—C5—C4A | 119.66 (17) | H10A—C10—H10B | 107.7 |
| C6—C5—H5 | 120.2 | C12—C11—C9 | 113.63 (15) |
| C4A—C5—H5 | 120.2 | C12—C11—H11A | 108.8 |
| C5—C6—C7 | 120.42 (17) | C9—C11—H11A | 108.8 |
| C5—C6—H6 | 119.8 | C12—C11—H11B | 108.8 |
| C7—C6—H6 | 119.8 | C9—C11—H11B | 108.8 |
| C8—C7—C6 | 120.59 (17) | H11A—C11—H11B | 107.7 |
| C8—C7—H7 | 119.7 | C11—C12—H12A | 109.5 |
| C6—C7—H7 | 119.7 | C11—C12—H12B | 109.5 |
| C7—C8—C8A | 119.55 (17) | H12A—C12—H12B | 109.5 |
| C7—C8—H8 | 120.2 | C11—C12—H12C | 109.5 |
| C8A—C8—H8 | 120.2 | H12A—C12—H12C | 109.5 |
| C4A—C8A—C8 | 120.07 (15) | H12B—C12—H12C | 109.5 |
| C4A—C8A—N1 | 121.71 (14) |
| H··· | ||||
| O2—H2···O1i | 0.85 (1) | 2.03 (1) | 2.8712 (19) | 171 (2) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O2—H2⋯O1i | 0.85 (1) | 2.03 (1) | 2.8712 (19) | 171 (2) |
Symmetry code: (i) .