Literature DB >> 23284495

Methyl (E)-2-cyano-3-(6-nitro-1,3-benzodioxol-5-yl)acrylate.

M Bakthadoss1, A Devaraj, D Lakshmanan, S Murugavel.   

Abstract

In the title compound, C(12)H(8)N(2)O(6), the 1,3-benzodioxole ring system is essentially planar [maximum deviation = 0.036 (2) Å] and the nitro group is oriented at a dihedral angle of 15.4 (1)° with respect to its mean plane. In the crystal, moleucles are linked into C(8) [101] chains by C-H⋯O hydrogen bonds, and weak aromatic π-π stacking [centroid-centroid distance = 3.887 (1) Å] also occurs.

Entities:  

Year:  2012        PMID: 23284495      PMCID: PMC3515275          DOI: 10.1107/S1600536812043164

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure and background references, see: Karthikeyan et al. (2011 ▶); Loghmani-Khouzani et al. (2009 ▶).

Experimental

Crystal data

C12H8N2O6 M = 276.20 Monoclinic, a = 10.8191 (9) Å b = 7.3220 (6) Å c = 15.4133 (13) Å β = 91.691 (2)° V = 1220.47 (18) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 293 K 0.23 × 0.22 × 0.17 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.972, T max = 0.979 14190 measured reflections 3567 independent reflections 2286 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.129 S = 1.03 3567 reflections 182 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia (1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812043164/hb6968sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812043164/hb6968Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812043164/hb6968Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H8N2O6F(000) = 568
Mr = 276.20Dx = 1.503 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3589 reflections
a = 10.8191 (9) Åθ = 2.3–30.1°
b = 7.3220 (6) ŵ = 0.12 mm1
c = 15.4133 (13) ÅT = 293 K
β = 91.691 (2)°Block, colourless
V = 1220.47 (18) Å30.23 × 0.22 × 0.17 mm
Z = 4
Bruker APEXII CCD diffractometer3567 independent reflections
Radiation source: fine-focus sealed tube2286 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
Detector resolution: 10.0 pixels mm-1θmax = 30.1°, θmin = 2.3°
ω scansh = −15→14
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −6→10
Tmin = 0.972, Tmax = 0.979l = −21→19
14190 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.129H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0569P)2 + 0.1956P] where P = (Fo2 + 2Fc2)/3
3567 reflections(Δ/σ)max = 0.001
182 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.34825 (14)0.0705 (2)0.14286 (9)0.0415 (3)
H10.31940.01630.19290.050*
C20.44834 (14)0.1836 (2)0.14611 (9)0.0408 (3)
C30.60882 (16)0.3581 (3)0.18676 (11)0.0560 (4)
H3A0.59740.47740.21260.067*
H3B0.69120.31490.20260.067*
C40.49334 (13)0.26561 (19)0.07304 (10)0.0395 (3)
C50.43953 (14)0.2399 (2)−0.00694 (9)0.0406 (3)
H50.46970.2955−0.05630.049*
C60.33678 (13)0.12542 (19)−0.01065 (8)0.0372 (3)
C70.28993 (13)0.03817 (19)0.06181 (9)0.0375 (3)
C80.18022 (14)−0.0796 (2)0.05853 (9)0.0428 (3)
H80.1115−0.03840.02660.051*
C90.17142 (13)−0.2415 (2)0.09786 (9)0.0414 (3)
C100.05270 (16)−0.3443 (2)0.09545 (10)0.0481 (4)
C11−0.0446 (2)−0.6111 (3)0.14488 (14)0.0865 (8)
H11A−0.0937−0.56370.19060.130*
H11B−0.0215−0.73490.15790.130*
H11C−0.0917−0.60770.09110.130*
C120.27569 (16)−0.3259 (2)0.14154 (11)0.0484 (4)
N10.35768 (15)−0.3935 (2)0.17628 (12)0.0710 (5)
N20.28260 (12)0.09294 (19)−0.09677 (8)0.0472 (3)
O10.51784 (12)0.23313 (16)0.21683 (7)0.0566 (3)
O20.59385 (11)0.36932 (17)0.09442 (7)0.0549 (3)
O30.21209 (14)−0.03492 (18)−0.10801 (8)0.0666 (4)
O40.31029 (14)0.1961 (2)−0.15503 (8)0.0796 (5)
O5−0.03967 (12)−0.2902 (2)0.06023 (9)0.0704 (4)
O60.06541 (12)−0.50122 (16)0.13725 (8)0.0589 (3)
U11U22U33U12U13U23
C10.0503 (9)0.0418 (8)0.0322 (6)−0.0033 (7)0.0004 (6)0.0053 (6)
C20.0479 (8)0.0384 (8)0.0357 (7)0.0000 (6)−0.0082 (6)0.0024 (6)
C30.0527 (10)0.0612 (10)0.0530 (9)−0.0109 (8)−0.0154 (8)0.0049 (8)
C40.0381 (7)0.0362 (7)0.0440 (7)−0.0009 (6)−0.0040 (6)0.0060 (6)
C50.0440 (8)0.0405 (7)0.0374 (7)0.0013 (6)0.0008 (6)0.0083 (6)
C60.0411 (7)0.0374 (7)0.0327 (6)0.0029 (6)−0.0050 (6)0.0023 (6)
C70.0390 (7)0.0346 (7)0.0389 (7)0.0005 (6)−0.0001 (6)0.0027 (6)
C80.0398 (8)0.0483 (8)0.0403 (7)−0.0002 (7)−0.0014 (6)−0.0014 (6)
C90.0381 (7)0.0464 (8)0.0400 (7)−0.0044 (6)0.0054 (6)−0.0008 (6)
C100.0468 (9)0.0586 (10)0.0395 (7)−0.0135 (8)0.0091 (7)−0.0080 (7)
C110.0961 (16)0.0936 (16)0.0707 (13)−0.0623 (14)0.0181 (11)−0.0093 (12)
C120.0437 (9)0.0436 (8)0.0584 (9)−0.0069 (7)0.0090 (7)0.0084 (7)
N10.0541 (9)0.0636 (10)0.0951 (13)0.0040 (8)0.0009 (9)0.0224 (9)
N20.0523 (8)0.0526 (8)0.0364 (6)−0.0010 (7)−0.0047 (6)0.0011 (6)
O10.0685 (8)0.0590 (7)0.0412 (6)−0.0174 (6)−0.0175 (5)0.0084 (5)
O20.0505 (7)0.0605 (7)0.0529 (6)−0.0165 (6)−0.0125 (5)0.0109 (6)
O30.0882 (9)0.0585 (8)0.0520 (7)−0.0219 (7)−0.0152 (6)−0.0052 (6)
O40.0919 (10)0.1096 (12)0.0367 (6)−0.0364 (9)−0.0120 (6)0.0199 (7)
O50.0437 (7)0.0963 (10)0.0708 (8)−0.0157 (7)−0.0048 (6)0.0024 (7)
O60.0640 (8)0.0560 (7)0.0575 (7)−0.0254 (6)0.0143 (6)−0.0048 (6)
C1—C21.363 (2)C7—C81.467 (2)
C1—C71.403 (2)C8—C91.336 (2)
C1—H10.9300C8—H80.9300
C2—O11.3553 (17)C9—C121.436 (2)
C2—C41.378 (2)C9—C101.488 (2)
C3—O21.430 (2)C10—O51.191 (2)
C3—O11.431 (2)C10—O61.323 (2)
C3—H3A0.9700C11—O61.444 (2)
C3—H3B0.9700C11—H11A0.9600
C4—O21.3589 (18)C11—H11B0.9600
C4—C51.361 (2)C11—H11C0.9600
C5—C61.392 (2)C12—N11.136 (2)
C5—H50.9300N2—O31.2169 (17)
C6—C71.3949 (19)N2—O41.2177 (17)
C6—N21.4547 (18)
C2—C1—C7118.11 (13)C1—C7—C8118.17 (13)
C2—C1—H1120.9C9—C8—C7125.06 (14)
C7—C1—H1120.9C9—C8—H8117.5
O1—C2—C1127.85 (13)C7—C8—H8117.5
O1—C2—C4109.86 (13)C8—C9—C12121.93 (14)
C1—C2—C4122.29 (13)C8—C9—C10120.68 (14)
O2—C3—O1107.47 (12)C12—C9—C10117.36 (14)
O2—C3—H3A110.2O5—C10—O6125.79 (15)
O1—C3—H3A110.2O5—C10—C9123.73 (16)
O2—C3—H3B110.2O6—C10—C9110.48 (15)
O1—C3—H3B110.2O6—C11—H11A109.5
H3A—C3—H3B108.5O6—C11—H11B109.5
O2—C4—C5127.95 (13)H11A—C11—H11B109.5
O2—C4—C2110.18 (13)O6—C11—H11C109.5
C5—C4—C2121.88 (13)H11A—C11—H11C109.5
C4—C5—C6116.13 (13)H11B—C11—H11C109.5
C4—C5—H5121.9N1—C12—C9179.57 (18)
C6—C5—H5121.9O3—N2—O4122.63 (13)
C5—C6—C7123.46 (13)O3—N2—C6119.32 (13)
C5—C6—N2115.83 (12)O4—N2—C6118.05 (13)
C7—C6—N2120.64 (13)C2—O1—C3106.34 (11)
C6—C7—C1118.12 (13)C4—O2—C3105.99 (12)
C6—C7—C8123.67 (13)C10—O6—C11116.71 (16)
C7—C1—C2—O1179.97 (15)C7—C8—C9—C12−6.3 (2)
C7—C1—C2—C4−0.1 (2)C7—C8—C9—C10175.68 (13)
O1—C2—C4—O20.51 (18)C8—C9—C10—O5−0.7 (2)
C1—C2—C4—O2−179.41 (14)C12—C9—C10—O5−178.88 (16)
O1—C2—C4—C5−179.43 (13)C8—C9—C10—O6179.10 (13)
C1—C2—C4—C50.7 (2)C12—C9—C10—O60.96 (19)
O2—C4—C5—C6179.86 (14)C5—C6—N2—O3163.45 (14)
C2—C4—C5—C6−0.2 (2)C7—C6—N2—O3−13.6 (2)
C4—C5—C6—C7−0.7 (2)C5—C6—N2—O4−16.5 (2)
C4—C5—C6—N2−177.74 (13)C7—C6—N2—O4166.40 (15)
C5—C6—C7—C11.2 (2)C1—C2—O1—C3−178.04 (16)
N2—C6—C7—C1178.11 (13)C4—C2—O1—C32.05 (18)
C5—C6—C7—C8178.73 (13)O2—C3—O1—C2−3.74 (18)
N2—C6—C7—C8−4.4 (2)C5—C4—O2—C3177.10 (16)
C2—C1—C7—C6−0.8 (2)C2—C4—O2—C3−2.83 (17)
C2—C1—C7—C8−178.41 (13)O1—C3—O2—C44.01 (18)
C6—C7—C8—C9135.22 (16)O5—C10—O6—C11−3.8 (2)
C1—C7—C8—C9−47.3 (2)C9—C10—O6—C11176.34 (14)
D—H···AD—HH···AD···AD—H···A
C3—H3B···O4i0.972.513.247 (2)132
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C3—H3B⋯O4i 0.972.513.247 (2)132

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (E)-3-(6-Nitro-benzo[d][1,3]dioxol-5-yl)-1-(2,4,6-trimethoxy-phen-yl)prop-2-en-1-one.

Authors:  Hossein Loghmani-Khouzani; Noorsaadah Abdul Rahman; Ward T Robinson; Marzieh Yaeghoobi; Reza Kia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-26

3.  2-[(6-Nitro-1,3-benzodioxol-5-yl)methyl-idene]malononitrile.

Authors:  S Karthikeyan; K Sethusankar; Anthonisamy Devaraj; Manickam Bakthadoss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-30

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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