Literature DB >> 22199944

2-[(6-Nitro-1,3-benzodioxol-5-yl)methyl-idene]malononitrile.

S Karthikeyan, K Sethusankar, Anthonisamy Devaraj, Manickam Bakthadoss.   

Abstract

In the title compound, C(11)H(5)N(3)O(4), the nitro group is rotated by 29.91 (16)° out of the plane of the adjacent aryl ring. The 1,3-benzodioxole ring is nearly planar, with a maximium deviation of 0.0562 (10) Å. The dioxolene ring adopts an envelope conformation on the O-C-O C atom. In the crystal, mol-ecules are linked via C-H⋯O inter-actions, resulting in R(2) (2)(6) and R(2) (2)(12) graph-set motifs.

Entities:  

Year:  2011        PMID: 22199944      PMCID: PMC3239096          DOI: 10.1107/S1600536811049816

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of malononitrile derivatives, see: Brimblecombe et al. (1972 ▶). For related structure, see: Loghmani–Khouzani et al. (2009 ▶). For comparison of mol­ecular dimensions, see: Allen et al. (1987 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For graph–set motif notations, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C11H5N3O4 M = 243.18 Triclinic, a = 7.0953 (2) Å b = 8.8847 (3) Å c = 9.2212 (3) Å α = 84.470 (2)° β = 67.634 (2)° γ = 78.874 (2)° V = 527.30 (3) Å3 Z = 2 Mo Kα radiation μ = 0.12 mm−1 T = 295 K 0.30 × 0.28 × 0.25 mm

Data collection

Bruker Kappa APEXII CCD diffractometer 13806 measured reflections 3494 independent reflections 2700 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.142 S = 1.03 3494 reflections 163 parameters H-atom parameters constrained Δρmax = 0.28 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al. 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811049816/rk2314sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811049816/rk2314Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811049816/rk2314Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H5N3O4Z = 2
Mr = 243.18F(000) = 248
Triclinic, P1Dx = 1.532 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.0953 (2) ÅCell parameters from 3494 reflections
b = 8.8847 (3) Åθ = 1.0–31.6°
c = 9.2212 (3) ŵ = 0.12 mm1
α = 84.470 (2)°T = 295 K
β = 67.634 (2)°Block, yellow
γ = 78.874 (2)°0.30 × 0.28 × 0.25 mm
V = 527.30 (3) Å3
Bruker Kappa APEXII CCD diffractometer2700 reflections with I > 2σ(I)
Radiation source: fine–focus sealed tubeRint = 0.025
graphiteθmax = 31.6°, θmin = 2.3°
ω scansh = −10→10
13806 measured reflectionsk = −12→12
3494 independent reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.142H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0779P)2 + 0.0833P] where P = (Fo2 + 2Fc2)/3
3494 reflections(Δ/σ)max < 0.001
163 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.30 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F, and R–factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.1956 (2)0.45131 (18)0.79855 (15)0.0499 (3)
H1A0.25530.34330.79690.060*
H1B0.21820.49950.87920.060*
C20.13009 (16)0.60560 (13)0.61230 (12)0.0335 (2)
C30.13982 (17)0.70725 (13)0.48999 (12)0.0345 (2)
H30.26630.72860.41900.041*
C4−0.04642 (16)0.77900 (12)0.47404 (12)0.0309 (2)
C5−0.23081 (16)0.74097 (12)0.58573 (13)0.0331 (2)
C6−0.24088 (17)0.63890 (13)0.71134 (13)0.0373 (2)
H6−0.36600.61710.78420.045*
C7−0.05588 (18)0.57270 (13)0.72113 (12)0.0351 (2)
C8−0.04545 (17)0.90159 (12)0.35650 (13)0.0347 (2)
H8−0.16120.97860.38180.042*
C90.10476 (19)0.91503 (13)0.21576 (14)0.0386 (2)
C100.0900 (2)1.05218 (15)0.12130 (16)0.0478 (3)
C110.2814 (2)0.79907 (17)0.14691 (15)0.0491 (3)
N1−0.42888 (15)0.80802 (11)0.57275 (13)0.0417 (2)
N20.0804 (3)1.16093 (16)0.04706 (18)0.0707 (4)
N30.4220 (2)0.7081 (2)0.09043 (17)0.0760 (5)
O1−0.02108 (14)0.46924 (11)0.82958 (10)0.0483 (2)
O20.28869 (13)0.52328 (11)0.64860 (10)0.0457 (2)
O3−0.43369 (15)0.84163 (11)0.44228 (12)0.0507 (3)
O4−0.58153 (15)0.82535 (14)0.69255 (14)0.0674 (4)
U11U22U33U12U13U23
C10.0424 (7)0.0658 (8)0.0332 (6)0.0027 (6)−0.0132 (5)0.0108 (5)
C20.0307 (5)0.0392 (5)0.0288 (5)−0.0007 (4)−0.0115 (4)−0.0001 (4)
C30.0298 (5)0.0412 (5)0.0304 (5)−0.0058 (4)−0.0101 (4)0.0036 (4)
C40.0308 (5)0.0307 (5)0.0304 (5)−0.0039 (4)−0.0114 (4)0.0004 (4)
C50.0279 (5)0.0323 (5)0.0367 (5)−0.0011 (4)−0.0111 (4)−0.0009 (4)
C60.0306 (5)0.0396 (6)0.0343 (5)−0.0040 (4)−0.0056 (4)0.0033 (4)
C70.0364 (5)0.0372 (5)0.0272 (5)−0.0026 (4)−0.0094 (4)0.0024 (4)
C80.0349 (5)0.0324 (5)0.0388 (5)−0.0057 (4)−0.0167 (4)0.0030 (4)
C90.0410 (6)0.0401 (6)0.0386 (6)−0.0114 (5)−0.0190 (5)0.0086 (4)
C100.0602 (8)0.0460 (7)0.0449 (7)−0.0211 (6)−0.0253 (6)0.0122 (5)
C110.0415 (7)0.0632 (8)0.0361 (6)−0.0077 (6)−0.0108 (5)0.0109 (5)
N10.0309 (5)0.0360 (5)0.0550 (6)−0.0031 (4)−0.0153 (4)0.0051 (4)
N20.1052 (13)0.0544 (7)0.0656 (9)−0.0313 (8)−0.0436 (9)0.0243 (6)
N30.0539 (8)0.0989 (12)0.0516 (8)0.0105 (8)−0.0062 (6)0.0049 (8)
O10.0414 (5)0.0590 (6)0.0362 (4)−0.0034 (4)−0.0116 (4)0.0164 (4)
O20.0336 (4)0.0603 (6)0.0375 (4)0.0003 (4)−0.0141 (3)0.0121 (4)
O30.0472 (5)0.0499 (5)0.0639 (6)−0.0064 (4)−0.0329 (5)0.0056 (4)
O40.0323 (5)0.0746 (7)0.0705 (7)0.0072 (5)−0.0034 (5)0.0157 (6)
C1—O11.4319 (17)C5—N11.4614 (14)
C1—O21.4334 (15)C6—C71.3635 (15)
C1—H1A0.9700C6—H60.9300
C1—H1B0.9700C7—O11.3525 (13)
C2—O21.3547 (13)C8—C91.3420 (16)
C2—C31.3641 (15)C8—H80.9300
C2—C71.3850 (16)C9—C111.4342 (19)
C3—C41.4068 (14)C9—C101.4388 (16)
C3—H30.9300C10—N21.1355 (18)
C4—C51.4016 (15)C11—N31.138 (2)
C4—C81.4597 (14)N1—O41.2145 (15)
C5—C61.3887 (15)N1—O31.2230 (14)
O1—C1—O2107.04 (9)C7—C6—H6122.1
O1—C1—H1A110.3C5—C6—H6122.1
O2—C1—H1A110.3O1—C7—C6128.09 (10)
O1—C1—H1B110.3O1—C7—C2110.03 (10)
O2—C1—H1B110.3C6—C7—C2121.87 (10)
H1A—C1—H1B108.6C9—C8—C4126.91 (10)
O2—C2—C3128.07 (10)C9—C8—H8116.5
O2—C2—C7109.65 (9)C4—C8—H8116.5
C3—C2—C7122.28 (10)C8—C9—C11124.80 (11)
C2—C3—C4118.30 (10)C8—C9—C10119.43 (12)
C2—C3—H3120.9C11—C9—C10115.74 (11)
C4—C3—H3120.9N2—C10—C9179.14 (15)
C5—C4—C3117.50 (9)N3—C11—C9179.09 (15)
C5—C4—C8121.96 (9)O4—N1—O3123.24 (11)
C3—C4—C8120.12 (9)O4—N1—C5118.09 (11)
C6—C5—C4124.20 (10)O3—N1—C5118.67 (10)
C6—C5—N1115.70 (10)C7—O1—C1105.81 (9)
C4—C5—N1120.10 (10)C2—O2—C1105.89 (9)
C7—C6—C5115.83 (10)
O2—C2—C3—C4179.32 (11)C3—C2—C7—C60.79 (18)
C7—C2—C3—C4−0.78 (17)C5—C4—C8—C9−154.85 (11)
C2—C3—C4—C50.01 (16)C3—C4—C8—C932.75 (16)
C2—C3—C4—C8172.74 (10)C4—C8—C9—C118.72 (19)
C3—C4—C5—C60.80 (17)C4—C8—C9—C10−173.31 (10)
C8—C4—C5—C6−171.78 (10)C6—C5—N1—O429.91 (16)
C3—C4—C5—N1−178.10 (9)C4—C5—N1—O4−151.10 (12)
C8—C4—C5—N19.32 (16)C6—C5—N1—O3−148.95 (11)
C4—C5—C6—C7−0.81 (17)C4—C5—N1—O330.04 (15)
N1—C5—C6—C7178.14 (10)C6—C7—O1—C1−173.03 (12)
C5—C6—C7—O1−179.34 (11)C2—C7—O1—C17.55 (14)
C5—C6—C7—C20.01 (17)O2—C1—O1—C7−12.15 (14)
O2—C2—C7—O10.17 (14)C3—C2—O2—C1172.11 (12)
C3—C2—C7—O1−179.75 (10)C7—C2—O2—C1−7.80 (14)
O2—C2—C7—C6−179.29 (10)O1—C1—O2—C212.26 (14)
D—H···AD—HH···AD···AD—H···A
C1—H1B···O1i0.972.533.2692 (16)133
C8—H8···O4ii0.932.523.3640 (17)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1B⋯O1i0.972.533.2692 (16)133
C8—H8⋯O4ii0.932.523.3640 (17)152

Symmetry codes: (i) ; (ii) .

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