| Literature DB >> 23284470 |
Abstract
In the title compound, C(20)H(20)NPSe, the P atom lies in a distorted tetra-hedral environment. The Tolman cone angle is 157° indicating steric crowding at this atom. In the crystal, weak C-H⋯Se inter-actions create linked dimeric units and C-H⋯π inter-actions are also observed.Entities:
Year: 2012 PMID: 23284470 PMCID: PMC3515250 DOI: 10.1107/S1600536812042602
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H20NPSe | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 9940 reflections |
| θ = 2.3–28.3° | |
| µ = 2.20 mm−1 | |
| β = 128.098 (5)° | Cuboid, colourless |
| 0.22 × 0.11 × 0.09 mm | |
| Bruker APEX DUO 4K CCD diffractometer | 4553 independent reflections |
| Radiation source: sealed tube | 3798 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.4 pixels mm-1 | θmax = 28.7°, θmin = 2.1° |
| φ and ω scans | |
| Absorption correction: multi-scan ( | |
| 31924 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4553 reflections | (Δ/σ)max = 0.001 |
| 210 parameters | Δρmax = 0.53 e Å−3 |
| 0 restraints | Δρmin = −0.72 e Å−3 |
| Experimental. The intensity data was collected on a Bruker Apex DUO 4 K CCD diffractometer using an exposure time of 20 s/frame. A total of 2352 frames were collected with a frame width of 0.5° covering up to θ = 28.66° with 99.3% completeness accomplished. |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| Se1 | 0.65445 (3) | 0.81555 (3) | 0.51517 (2) | 0.02312 (9) | |
| P1 | 0.79548 (6) | 0.70500 (6) | 0.51220 (4) | 0.01475 (13) | |
| N1 | 0.5685 (2) | 0.1943 (2) | 0.33365 (16) | 0.0202 (4) | |
| C1 | 0.8477 (2) | 0.7754 (2) | 0.44440 (17) | 0.0158 (5) | |
| C2 | 0.9861 (3) | 0.7749 (3) | 0.4794 (2) | 0.0284 (6) | |
| H2 | 1.0572 | 0.744 | 0.5427 | 0.034* | |
| C3 | 1.0206 (3) | 0.8195 (3) | 0.4219 (2) | 0.0354 (7) | |
| H3 | 1.1152 | 0.8193 | 0.4463 | 0.042* | |
| C4 | 0.9182 (3) | 0.8642 (3) | 0.3296 (2) | 0.0236 (5) | |
| H4 | 0.9421 | 0.8945 | 0.2906 | 0.028* | |
| C5 | 0.7798 (3) | 0.8645 (3) | 0.29429 (19) | 0.0222 (5) | |
| H5 | 0.7089 | 0.894 | 0.2305 | 0.027* | |
| C6 | 0.7448 (3) | 0.8218 (3) | 0.35178 (19) | 0.0211 (5) | |
| H6 | 0.6504 | 0.8243 | 0.3278 | 0.025* | |
| C7 | 0.9584 (2) | 0.6739 (2) | 0.63238 (17) | 0.0160 (5) | |
| C8 | 1.0104 (3) | 0.5520 (2) | 0.66278 (18) | 0.0179 (5) | |
| H8 | 0.9605 | 0.4827 | 0.6205 | 0.021* | |
| C9 | 1.1364 (3) | 0.5315 (3) | 0.75581 (19) | 0.0229 (5) | |
| H9 | 1.1713 | 0.4484 | 0.777 | 0.027* | |
| C10 | 1.2095 (3) | 0.6329 (3) | 0.81646 (19) | 0.0266 (6) | |
| H10 | 1.2953 | 0.6191 | 0.8791 | 0.032* | |
| C11 | 1.1586 (3) | 0.7546 (3) | 0.78654 (19) | 0.0267 (6) | |
| H11 | 1.2098 | 0.8235 | 0.8288 | 0.032* | |
| C12 | 1.0330 (3) | 0.7762 (3) | 0.69497 (19) | 0.0216 (5) | |
| H12 | 0.9979 | 0.8595 | 0.6749 | 0.026* | |
| C13 | 0.7256 (2) | 0.5533 (2) | 0.45680 (17) | 0.0156 (5) | |
| C14 | 0.7489 (2) | 0.4999 (2) | 0.39474 (17) | 0.0163 (5) | |
| H14 | 0.802 | 0.5451 | 0.3809 | 0.02* | |
| C15 | 0.6959 (2) | 0.3825 (2) | 0.35318 (17) | 0.0168 (5) | |
| H15 | 0.7116 | 0.3495 | 0.3102 | 0.02* | |
| C16 | 0.6189 (2) | 0.3111 (2) | 0.37367 (17) | 0.0167 (5) | |
| C17 | 0.5955 (2) | 0.3657 (2) | 0.43629 (17) | 0.0179 (5) | |
| H17 | 0.5443 | 0.3202 | 0.4517 | 0.022* | |
| C18 | 0.6462 (2) | 0.4845 (2) | 0.47526 (17) | 0.0168 (5) | |
| H18 | 0.6267 | 0.5201 | 0.5155 | 0.02* | |
| C19 | 0.6003 (3) | 0.1393 (3) | 0.2728 (2) | 0.0234 (5) | |
| H19A | 0.5672 | 0.1957 | 0.2182 | 0.035* | |
| H19B | 0.5536 | 0.0575 | 0.2482 | 0.035* | |
| H19C | 0.7013 | 0.1278 | 0.3113 | 0.035* | |
| C20 | 0.5016 (3) | 0.1166 (3) | 0.3625 (2) | 0.0278 (6) | |
| H20A | 0.5668 | 0.1017 | 0.4326 | 0.042* | |
| H20B | 0.4743 | 0.0359 | 0.3282 | 0.042* | |
| H20C | 0.4184 | 0.1599 | 0.3463 | 0.042* |
| Se1 | 0.02080 (14) | 0.02423 (15) | 0.02604 (15) | 0.00213 (10) | 0.01530 (12) | −0.00154 (11) |
| P1 | 0.0118 (3) | 0.0177 (3) | 0.0128 (3) | −0.0002 (2) | 0.0066 (2) | 0.0010 (2) |
| N1 | 0.0205 (10) | 0.0189 (11) | 0.0198 (11) | −0.0039 (8) | 0.0116 (9) | −0.0033 (8) |
| C1 | 0.0143 (11) | 0.0166 (11) | 0.0149 (11) | 0.0002 (9) | 0.0081 (9) | −0.0001 (9) |
| C2 | 0.0152 (12) | 0.0482 (18) | 0.0205 (13) | 0.0057 (12) | 0.0103 (11) | 0.0125 (12) |
| C3 | 0.0191 (13) | 0.060 (2) | 0.0305 (16) | 0.0037 (14) | 0.0173 (13) | 0.0129 (15) |
| C4 | 0.0248 (13) | 0.0277 (14) | 0.0226 (13) | 0.0009 (11) | 0.0168 (12) | 0.0028 (11) |
| C5 | 0.0216 (12) | 0.0262 (13) | 0.0161 (12) | 0.0016 (10) | 0.0102 (11) | 0.0051 (10) |
| C6 | 0.0138 (11) | 0.0274 (13) | 0.0186 (12) | −0.0003 (10) | 0.0082 (10) | 0.0033 (10) |
| C7 | 0.0135 (10) | 0.0210 (12) | 0.0130 (11) | −0.0011 (9) | 0.0078 (9) | 0.0007 (9) |
| C8 | 0.0152 (11) | 0.0237 (12) | 0.0154 (11) | 0.0014 (9) | 0.0098 (10) | 0.0027 (9) |
| C9 | 0.0179 (12) | 0.0332 (15) | 0.0192 (13) | 0.0073 (10) | 0.0122 (11) | 0.0094 (11) |
| C10 | 0.0144 (12) | 0.0492 (18) | 0.0126 (12) | 0.0013 (11) | 0.0065 (10) | 0.0035 (11) |
| C11 | 0.0200 (13) | 0.0401 (17) | 0.0159 (12) | −0.0093 (12) | 0.0091 (11) | −0.0090 (11) |
| C12 | 0.0202 (12) | 0.0248 (13) | 0.0196 (13) | −0.0038 (10) | 0.0121 (11) | −0.0028 (10) |
| C13 | 0.0096 (10) | 0.0197 (11) | 0.0124 (11) | 0.0007 (9) | 0.0043 (9) | 0.0013 (9) |
| C14 | 0.0122 (10) | 0.0192 (12) | 0.0144 (11) | 0.0005 (9) | 0.0067 (9) | 0.0010 (9) |
| C15 | 0.0138 (11) | 0.0206 (12) | 0.0142 (11) | 0.0019 (9) | 0.0077 (9) | −0.0003 (9) |
| C16 | 0.0114 (10) | 0.0183 (11) | 0.0126 (11) | 0.0007 (9) | 0.0035 (9) | 0.0004 (9) |
| C17 | 0.0149 (11) | 0.0221 (12) | 0.0149 (11) | −0.0033 (9) | 0.0082 (10) | 0.0004 (9) |
| C18 | 0.0142 (11) | 0.0223 (12) | 0.0119 (11) | −0.0003 (9) | 0.0071 (9) | 0.0007 (9) |
| C19 | 0.0197 (12) | 0.0226 (13) | 0.0239 (13) | −0.0016 (10) | 0.0114 (11) | −0.0058 (10) |
| C20 | 0.0345 (15) | 0.0219 (13) | 0.0248 (14) | −0.0096 (11) | 0.0172 (13) | −0.0030 (11) |
| Se1—P1 | 2.1069 (7) | C9—H9 | 0.95 |
| P1—C13 | 1.800 (3) | C10—C11 | 1.388 (4) |
| P1—C1 | 1.818 (3) | C10—H10 | 0.95 |
| P1—C7 | 1.823 (2) | C11—C12 | 1.392 (4) |
| N1—C16 | 1.369 (3) | C11—H11 | 0.95 |
| N1—C20 | 1.452 (3) | C12—H12 | 0.95 |
| N1—C19 | 1.461 (3) | C13—C18 | 1.399 (3) |
| C1—C6 | 1.392 (3) | C13—C14 | 1.402 (3) |
| C1—C2 | 1.394 (3) | C14—C15 | 1.386 (3) |
| C2—C3 | 1.391 (4) | C14—H14 | 0.95 |
| C2—H2 | 0.95 | C15—C16 | 1.414 (3) |
| C3—C4 | 1.380 (4) | C15—H15 | 0.95 |
| C3—H3 | 0.95 | C16—C17 | 1.417 (4) |
| C4—C5 | 1.390 (4) | C17—C18 | 1.385 (3) |
| C4—H4 | 0.95 | C17—H17 | 0.95 |
| C5—C6 | 1.390 (4) | C18—H18 | 0.95 |
| C5—H5 | 0.95 | C19—H19A | 0.98 |
| C6—H6 | 0.95 | C19—H19B | 0.98 |
| C7—C8 | 1.394 (3) | C19—H19C | 0.98 |
| C7—C12 | 1.406 (4) | C20—H20A | 0.98 |
| C8—C9 | 1.404 (3) | C20—H20B | 0.98 |
| C8—H8 | 0.95 | C20—H20C | 0.98 |
| C9—C10 | 1.383 (4) | ||
| C13—P1—C1 | 104.77 (11) | C11—C10—H10 | 119.7 |
| C13—P1—C7 | 106.04 (11) | C10—C11—C12 | 120.4 (3) |
| C1—P1—C7 | 105.02 (11) | C10—C11—H11 | 119.8 |
| C13—P1—Se1 | 112.98 (8) | C12—C11—H11 | 119.8 |
| C1—P1—Se1 | 113.96 (8) | C11—C12—C7 | 119.5 (3) |
| C7—P1—Se1 | 113.26 (8) | C11—C12—H12 | 120.2 |
| C16—N1—C20 | 120.4 (2) | C7—C12—H12 | 120.2 |
| C16—N1—C19 | 119.9 (2) | C18—C13—C14 | 117.8 (2) |
| C20—N1—C19 | 119.0 (2) | C18—C13—P1 | 120.45 (19) |
| C6—C1—C2 | 119.2 (2) | C14—C13—P1 | 121.71 (18) |
| C6—C1—P1 | 118.79 (18) | C15—C14—C13 | 121.4 (2) |
| C2—C1—P1 | 121.80 (19) | C15—C14—H14 | 119.3 |
| C3—C2—C1 | 120.2 (3) | C13—C14—H14 | 119.3 |
| C3—C2—H2 | 119.9 | C14—C15—C16 | 121.0 (2) |
| C1—C2—H2 | 119.9 | C14—C15—H15 | 119.5 |
| C4—C3—C2 | 120.5 (3) | C16—C15—H15 | 119.5 |
| C4—C3—H3 | 119.8 | N1—C16—C15 | 120.9 (2) |
| C2—C3—H3 | 119.8 | N1—C16—C17 | 121.7 (2) |
| C3—C4—C5 | 119.5 (3) | C15—C16—C17 | 117.3 (2) |
| C3—C4—H4 | 120.2 | C18—C17—C16 | 120.8 (2) |
| C5—C4—H4 | 120.2 | C18—C17—H17 | 119.6 |
| C6—C5—C4 | 120.4 (2) | C16—C17—H17 | 119.6 |
| C6—C5—H5 | 119.8 | C17—C18—C13 | 121.6 (2) |
| C4—C5—H5 | 119.8 | C17—C18—H18 | 119.2 |
| C5—C6—C1 | 120.2 (2) | C13—C18—H18 | 119.2 |
| C5—C6—H6 | 119.9 | N1—C19—H19A | 109.5 |
| C1—C6—H6 | 119.9 | N1—C19—H19B | 109.5 |
| C8—C7—C12 | 119.8 (2) | H19A—C19—H19B | 109.5 |
| C8—C7—P1 | 121.55 (19) | N1—C19—H19C | 109.5 |
| C12—C7—P1 | 118.67 (19) | H19A—C19—H19C | 109.5 |
| C7—C8—C9 | 120.0 (2) | H19B—C19—H19C | 109.5 |
| C7—C8—H8 | 120 | N1—C20—H20A | 109.5 |
| C9—C8—H8 | 120 | N1—C20—H20B | 109.5 |
| C10—C9—C8 | 119.7 (3) | H20A—C20—H20B | 109.5 |
| C10—C9—H9 | 120.1 | N1—C20—H20C | 109.5 |
| C8—C9—H9 | 120.1 | H20A—C20—H20C | 109.5 |
| C9—C10—C11 | 120.6 (2) | H20B—C20—H20C | 109.5 |
| C9—C10—H10 | 119.7 | ||
| C13—P1—C1—C6 | 74.9 (2) | C9—C10—C11—C12 | 0.1 (4) |
| C7—P1—C1—C6 | −173.6 (2) | C10—C11—C12—C7 | −0.6 (4) |
| Se1—P1—C1—C6 | −49.0 (2) | C8—C7—C12—C11 | 0.4 (4) |
| C13—P1—C1—C2 | −99.9 (2) | P1—C7—C12—C11 | −179.1 (2) |
| C7—P1—C1—C2 | 11.6 (3) | C1—P1—C13—C18 | −165.27 (19) |
| Se1—P1—C1—C2 | 136.2 (2) | C7—P1—C13—C18 | 84.0 (2) |
| C6—C1—C2—C3 | −0.5 (5) | Se1—P1—C13—C18 | −40.7 (2) |
| P1—C1—C2—C3 | 174.3 (3) | C1—P1—C13—C14 | 15.1 (2) |
| C1—C2—C3—C4 | −0.3 (5) | C7—P1—C13—C14 | −95.7 (2) |
| C2—C3—C4—C5 | 0.1 (5) | Se1—P1—C13—C14 | 139.70 (18) |
| C3—C4—C5—C6 | 0.9 (4) | C18—C13—C14—C15 | −0.3 (3) |
| C4—C5—C6—C1 | −1.7 (4) | P1—C13—C14—C15 | 179.32 (18) |
| C2—C1—C6—C5 | 1.4 (4) | C13—C14—C15—C16 | −1.4 (4) |
| P1—C1—C6—C5 | −173.5 (2) | C20—N1—C16—C15 | 173.9 (2) |
| C13—P1—C7—C8 | 3.9 (2) | C19—N1—C16—C15 | 3.2 (3) |
| C1—P1—C7—C8 | −106.7 (2) | C20—N1—C16—C17 | −6.6 (4) |
| Se1—P1—C7—C8 | 128.35 (19) | C19—N1—C16—C17 | −177.3 (2) |
| C13—P1—C7—C12 | −176.58 (19) | C14—C15—C16—N1 | −179.0 (2) |
| C1—P1—C7—C12 | 72.8 (2) | C14—C15—C16—C17 | 1.5 (3) |
| Se1—P1—C7—C12 | −52.1 (2) | N1—C16—C17—C18 | −179.4 (2) |
| C12—C7—C8—C9 | 0.4 (4) | C15—C16—C17—C18 | 0.1 (3) |
| P1—C7—C8—C9 | 179.88 (19) | C16—C17—C18—C13 | −1.9 (4) |
| C7—C8—C9—C10 | −0.9 (4) | C14—C13—C18—C17 | 2.0 (3) |
| C8—C9—C10—C11 | 0.7 (4) | P1—C13—C18—C17 | −177.68 (18) |
| H··· | ||||
| C20—H20 | 0.98 | 3.25 | 3.833 (3) | 120 |
| C20—H20 | 0.98 | 3.07 | 3.707 (3) | 124 |
| C4—H4··· | 0.95 | 2.66 | 3.476 (4) | 145 |
| C15—H15··· | 0.95 | 2.90 | 3.699 (3) | 142 |
| C19—H19 | 0.98 | 2.79 | 3.627 (3) | 144 |
Hydrogen-bond geometry (Å, °)
Cg1 and Cg2 refer to the centroids of the C7–C12 and C13–C18 rings, respectively.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C20—H20 | 0.98 | 3.25 | 3.833 (3) | 120 |
| C20—H20 | 0.98 | 3.07 | 3.707 (3) | 124 |
| C4—H4⋯ | 0.95 | 2.66 | 3.476 (4) | 145 |
| C15—H15⋯ | 0.95 | 2.90 | 3.699 (3) | 142 |
| C19—H19 | 0.98 | 2.79 | 3.627 (3) | 144 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .