| Literature DB >> 22259525 |
Zanele H Phasha1, Sizwe Makhoba, Alfred Muller.
Abstract
In the title mol-ecule, C(20)H(32)NPSe, the P atom has a distorted tetra-hedral environment resulting in an effective cone angle of 172°. Weak inter-molecular C-H⋯Se inter-actions are observed.Entities:
Year: 2011 PMID: 22259525 PMCID: PMC3254574 DOI: 10.1107/S1600536811054006
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H32NPSe | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 9647 reflections |
| θ = 2.2–28.2° | |
| µ = 1.93 mm−1 | |
| β = 97.050 (3)° | Plate, colourless |
| 0.29 × 0.12 × 0.05 mm | |
| Bruker APEX DUO 4K CCD diffractometer | 5008 independent reflections |
| graphite | 4192 reflections with |
| Detector resolution: 8.4 pixels mm-1 | |
| φ and ω scans | θmax = 28.3°, θmin = 1.7° |
| Absorption correction: multi-scan ( | |
| 31168 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 5008 reflections | (Δ/σ)max = 0.001 |
| 210 parameters | Δρmax = 0.53 e Å−3 |
| 0 restraints | Δρmin = −0.24 e Å−3 |
| Experimental. The intensity data was collected on a Bruker Apex DUO 4 K CCD diffractometer
using an exposure time of 30 s/frame. A total of 1671 frames were collected
with a frame width of 0.5° covering up to θ = 28.29° with 99.8%
completeness accomplished. Analytical data: 1H NMR (CDCl3, 400 MHz) δ
7.68, 6.69 (m, 4H), 2.99 (s, 6H), 2.19–1.13 (m, 22H); 13C {H} NMR (CDCl3,
100 MHz) δ 152.2, 134.2, 111.0 (Ar); 40.0 (Me); 36.72, 26.36 (Cy); 31P {H}
NMR (CDCl3, 160 MHz):δ = 52.9 (t, 1 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| Se1 | 0.198411 (13) | 0.25268 (2) | 0.085698 (7) | 0.01880 (5) | |
| P1 | 0.17385 (3) | 0.54119 (5) | 0.114465 (16) | 0.01278 (8) | |
| C2 | 0.30292 (12) | 0.4535 (2) | 0.21383 (6) | 0.0180 (3) | |
| H2 | 0.2882 | 0.3209 | 0.2037 | 0.022* | |
| N1 | 0.45558 (12) | 0.7312 (2) | 0.32915 (6) | 0.0252 (3) | |
| C1 | 0.26027 (12) | 0.6017 (2) | 0.17787 (6) | 0.0139 (3) | |
| C3 | 0.36616 (13) | 0.4943 (2) | 0.26382 (7) | 0.0198 (3) | |
| H3 | 0.3931 | 0.3898 | 0.2876 | 0.024* | |
| C4 | 0.39116 (12) | 0.6884 (2) | 0.28002 (6) | 0.0179 (3) | |
| C5 | 0.34835 (12) | 0.8385 (2) | 0.24342 (6) | 0.0175 (3) | |
| H5 | 0.3638 | 0.9713 | 0.2531 | 0.021* | |
| C6 | 0.28439 (12) | 0.7956 (2) | 0.19382 (6) | 0.0149 (3) | |
| H6 | 0.2563 | 0.8994 | 0.1701 | 0.018* | |
| C7 | 0.46054 (15) | 0.9295 (3) | 0.35068 (7) | 0.0279 (4) | |
| H7A | 0.4903 | 1.0163 | 0.324 | 0.042* | |
| H7B | 0.5074 | 0.9331 | 0.3865 | 0.042* | |
| H7C | 0.3872 | 0.9732 | 0.3561 | 0.042* | |
| C8 | 0.49523 (14) | 0.5753 (3) | 0.36689 (7) | 0.0269 (4) | |
| H8A | 0.4342 | 0.5178 | 0.3835 | 0.04* | |
| H8B | 0.5485 | 0.6281 | 0.3965 | 0.04* | |
| H8C | 0.5298 | 0.4744 | 0.3462 | 0.04* | |
| C9 | 0.03310 (12) | 0.5742 (2) | 0.12921 (6) | 0.0144 (3) | |
| H9 | −0.0153 | 0.5443 | 0.0939 | 0.017* | |
| C10 | 0.00619 (13) | 0.7830 (2) | 0.14649 (7) | 0.0189 (3) | |
| H10A | 0.0529 | 0.8187 | 0.1813 | 0.023* | |
| H10B | 0.0212 | 0.8761 | 0.1169 | 0.023* | |
| C11 | −0.11370 (13) | 0.7973 (3) | 0.15585 (8) | 0.0242 (4) | |
| H11A | −0.1286 | 0.9305 | 0.1692 | 0.029* | |
| H11B | −0.16 | 0.7763 | 0.1199 | 0.029* | |
| C12 | −0.14340 (14) | 0.6474 (3) | 0.19833 (7) | 0.0234 (3) | |
| H12A | −0.2224 | 0.6548 | 0.201 | 0.028* | |
| H12B | −0.1042 | 0.6788 | 0.2355 | 0.028* | |
| C13 | −0.11435 (13) | 0.4399 (2) | 0.18195 (7) | 0.0201 (3) | |
| H13A | −0.1602 | 0.4021 | 0.147 | 0.024* | |
| H13B | −0.1295 | 0.3475 | 0.2117 | 0.024* | |
| C14 | 0.00578 (12) | 0.4261 (2) | 0.17331 (6) | 0.0178 (3) | |
| H14A | 0.022 | 0.2921 | 0.1611 | 0.021* | |
| H14B | 0.0517 | 0.4522 | 0.2091 | 0.021* | |
| C15 | 0.19907 (12) | 0.7244 (2) | 0.06209 (6) | 0.0138 (3) | |
| H15 | 0.1885 | 0.8568 | 0.0783 | 0.017* | |
| C16 | 0.11808 (12) | 0.7031 (2) | 0.00891 (6) | 0.0170 (3) | |
| H16A | 0.1222 | 0.5685 | −0.0059 | 0.02* | |
| H16B | 0.0433 | 0.7244 | 0.0182 | 0.02* | |
| C17 | 0.14214 (13) | 0.8499 (2) | −0.03583 (6) | 0.0194 (3) | |
| H17A | 0.0914 | 0.8273 | −0.0703 | 0.023* | |
| H17B | 0.1301 | 0.9844 | −0.0226 | 0.023* | |
| C18 | 0.25890 (13) | 0.8306 (3) | −0.04903 (7) | 0.0236 (3) | |
| H18A | 0.2694 | 0.6997 | −0.0651 | 0.028* | |
| H18B | 0.2729 | 0.9302 | −0.0771 | 0.028* | |
| C19 | 0.33917 (13) | 0.8580 (3) | 0.00356 (7) | 0.0211 (3) | |
| H19A | 0.3329 | 0.9928 | 0.0179 | 0.025* | |
| H19B | 0.4143 | 0.84 | −0.0056 | 0.025* | |
| C20 | 0.31696 (12) | 0.7111 (2) | 0.04871 (6) | 0.0172 (3) | |
| H20A | 0.3673 | 0.7367 | 0.0831 | 0.021* | |
| H20B | 0.3312 | 0.577 | 0.0359 | 0.021* |
| Se1 | 0.02229 (8) | 0.00922 (8) | 0.02423 (9) | 0.00091 (6) | 0.00027 (6) | −0.00182 (6) |
| P1 | 0.01404 (17) | 0.00898 (16) | 0.01457 (17) | −0.00026 (14) | −0.00125 (13) | 0.00036 (14) |
| C2 | 0.0184 (7) | 0.0145 (7) | 0.0201 (7) | −0.0009 (6) | −0.0014 (6) | 0.0038 (6) |
| N1 | 0.0244 (7) | 0.0300 (8) | 0.0187 (7) | −0.0028 (6) | −0.0079 (5) | 0.0012 (6) |
| C1 | 0.0128 (6) | 0.0141 (7) | 0.0143 (7) | −0.0005 (5) | −0.0009 (5) | 0.0011 (6) |
| C3 | 0.0185 (7) | 0.0208 (8) | 0.0190 (7) | 0.0004 (6) | −0.0020 (6) | 0.0064 (6) |
| C4 | 0.0124 (7) | 0.0253 (8) | 0.0153 (7) | −0.0016 (6) | −0.0014 (5) | 0.0014 (6) |
| C5 | 0.0168 (7) | 0.0160 (7) | 0.0191 (7) | −0.0021 (6) | 0.0001 (6) | −0.0008 (6) |
| C6 | 0.0145 (7) | 0.0143 (7) | 0.0156 (7) | 0.0005 (5) | 0.0002 (5) | 0.0021 (5) |
| C7 | 0.0258 (9) | 0.0357 (10) | 0.0203 (8) | −0.0039 (8) | −0.0047 (7) | −0.0057 (7) |
| C8 | 0.0219 (8) | 0.0409 (11) | 0.0166 (8) | 0.0064 (8) | −0.0028 (6) | 0.0033 (7) |
| C9 | 0.0143 (7) | 0.0131 (7) | 0.0147 (7) | −0.0011 (5) | −0.0029 (5) | 0.0007 (5) |
| C10 | 0.0173 (7) | 0.0141 (7) | 0.0251 (8) | 0.0014 (6) | 0.0020 (6) | 0.0008 (6) |
| C11 | 0.0189 (8) | 0.0210 (8) | 0.0332 (9) | 0.0038 (6) | 0.0048 (7) | −0.0009 (7) |
| C12 | 0.0219 (8) | 0.0242 (9) | 0.0248 (8) | −0.0023 (7) | 0.0054 (6) | −0.0063 (7) |
| C13 | 0.0213 (8) | 0.0198 (8) | 0.0197 (7) | −0.0053 (6) | 0.0048 (6) | −0.0033 (6) |
| C14 | 0.0198 (7) | 0.0145 (7) | 0.0188 (7) | −0.0022 (6) | 0.0014 (6) | 0.0013 (6) |
| C15 | 0.0168 (7) | 0.0103 (7) | 0.0133 (6) | −0.0007 (5) | −0.0016 (5) | 0.0009 (5) |
| C16 | 0.0168 (7) | 0.0174 (7) | 0.0154 (7) | −0.0020 (6) | −0.0038 (6) | 0.0011 (6) |
| C17 | 0.0215 (8) | 0.0199 (8) | 0.0157 (7) | 0.0001 (6) | −0.0026 (6) | 0.0024 (6) |
| C18 | 0.0243 (8) | 0.0317 (9) | 0.0145 (7) | 0.0002 (7) | 0.0019 (6) | 0.0036 (7) |
| C19 | 0.0189 (7) | 0.0260 (9) | 0.0184 (7) | −0.0035 (6) | 0.0019 (6) | 0.0031 (7) |
| C20 | 0.0155 (7) | 0.0194 (8) | 0.0159 (7) | −0.0006 (6) | −0.0015 (5) | 0.0007 (6) |
| Se1—P1 | 2.1241 (5) | C11—C12 | 1.525 (2) |
| P1—C1 | 1.8034 (15) | C11—H11A | 0.99 |
| P1—C15 | 1.8321 (15) | C11—H11B | 0.99 |
| P1—C9 | 1.8354 (15) | C12—C13 | 1.527 (2) |
| C2—C3 | 1.383 (2) | C12—H12A | 0.99 |
| C2—C1 | 1.394 (2) | C12—H12B | 0.99 |
| C2—H2 | 0.95 | C13—C14 | 1.531 (2) |
| N1—C4 | 1.376 (2) | C13—H13A | 0.99 |
| N1—C8 | 1.447 (2) | C13—H13B | 0.99 |
| N1—C7 | 1.450 (2) | C14—H14A | 0.99 |
| C1—C6 | 1.401 (2) | C14—H14B | 0.99 |
| C3—C4 | 1.406 (2) | C15—C16 | 1.535 (2) |
| C3—H3 | 0.95 | C15—C20 | 1.536 (2) |
| C4—C5 | 1.413 (2) | C15—H15 | 1 |
| C5—C6 | 1.383 (2) | C16—C17 | 1.529 (2) |
| C5—H5 | 0.95 | C16—H16A | 0.99 |
| C6—H6 | 0.95 | C16—H16B | 0.99 |
| C7—H7A | 0.98 | C17—C18 | 1.524 (2) |
| C7—H7B | 0.98 | C17—H17A | 0.99 |
| C7—H7C | 0.98 | C17—H17B | 0.99 |
| C8—H8A | 0.98 | C18—C19 | 1.524 (2) |
| C8—H8B | 0.98 | C18—H18A | 0.99 |
| C8—H8C | 0.98 | C18—H18B | 0.99 |
| C9—C10 | 1.534 (2) | C19—C20 | 1.531 (2) |
| C9—C14 | 1.536 (2) | C19—H19A | 0.99 |
| C9—H9 | 1 | C19—H19B | 0.99 |
| C10—C11 | 1.532 (2) | C20—H20A | 0.99 |
| C10—H10A | 0.99 | C20—H20B | 0.99 |
| C10—H10B | 0.99 | ||
| C1—P1—C15 | 107.10 (7) | H11A—C11—H11B | 107.9 |
| C1—P1—C9 | 106.66 (7) | C11—C12—C13 | 111.49 (13) |
| C15—P1—C9 | 107.20 (7) | C11—C12—H12A | 109.3 |
| C1—P1—Se1 | 113.31 (5) | C13—C12—H12A | 109.3 |
| C15—P1—Se1 | 111.45 (5) | C11—C12—H12B | 109.3 |
| C9—P1—Se1 | 110.79 (5) | C13—C12—H12B | 109.3 |
| C3—C2—C1 | 121.75 (15) | H12A—C12—H12B | 108 |
| C3—C2—H2 | 119.1 | C12—C13—C14 | 110.87 (13) |
| C1—C2—H2 | 119.1 | C12—C13—H13A | 109.5 |
| C4—N1—C8 | 120.06 (15) | C14—C13—H13A | 109.5 |
| C4—N1—C7 | 120.11 (14) | C12—C13—H13B | 109.5 |
| C8—N1—C7 | 117.82 (14) | C14—C13—H13B | 109.5 |
| C2—C1—C6 | 117.66 (13) | H13A—C13—H13B | 108.1 |
| C2—C1—P1 | 120.06 (12) | C13—C14—C9 | 110.75 (13) |
| C6—C1—P1 | 122.26 (11) | C13—C14—H14A | 109.5 |
| C2—C3—C4 | 120.95 (14) | C9—C14—H14A | 109.5 |
| C2—C3—H3 | 119.5 | C13—C14—H14B | 109.5 |
| C4—C3—H3 | 119.5 | C9—C14—H14B | 109.5 |
| N1—C4—C3 | 121.62 (15) | H14A—C14—H14B | 108.1 |
| N1—C4—C5 | 121.10 (15) | C16—C15—C20 | 111.07 (12) |
| C3—C4—C5 | 117.27 (14) | C16—C15—P1 | 111.22 (10) |
| C6—C5—C4 | 121.14 (15) | C20—C15—P1 | 110.56 (10) |
| C6—C5—H5 | 119.4 | C16—C15—H15 | 107.9 |
| C4—C5—H5 | 119.4 | C20—C15—H15 | 107.9 |
| C5—C6—C1 | 121.22 (14) | P1—C15—H15 | 107.9 |
| C5—C6—H6 | 119.4 | C17—C16—C15 | 111.31 (12) |
| C1—C6—H6 | 119.4 | C17—C16—H16A | 109.4 |
| N1—C7—H7A | 109.5 | C15—C16—H16A | 109.4 |
| N1—C7—H7B | 109.5 | C17—C16—H16B | 109.4 |
| H7A—C7—H7B | 109.5 | C15—C16—H16B | 109.4 |
| N1—C7—H7C | 109.5 | H16A—C16—H16B | 108 |
| H7A—C7—H7C | 109.5 | C18—C17—C16 | 111.28 (13) |
| H7B—C7—H7C | 109.5 | C18—C17—H17A | 109.4 |
| N1—C8—H8A | 109.5 | C16—C17—H17A | 109.4 |
| N1—C8—H8B | 109.5 | C18—C17—H17B | 109.4 |
| H8A—C8—H8B | 109.5 | C16—C17—H17B | 109.4 |
| N1—C8—H8C | 109.5 | H17A—C17—H17B | 108 |
| H8A—C8—H8C | 109.5 | C19—C18—C17 | 110.77 (13) |
| H8B—C8—H8C | 109.5 | C19—C18—H18A | 109.5 |
| C10—C9—C14 | 110.55 (12) | C17—C18—H18A | 109.5 |
| C10—C9—P1 | 114.22 (10) | C19—C18—H18B | 109.5 |
| C14—C9—P1 | 110.38 (10) | C17—C18—H18B | 109.5 |
| C10—C9—H9 | 107.1 | H18A—C18—H18B | 108.1 |
| C14—C9—H9 | 107.1 | C18—C19—C20 | 110.82 (13) |
| P1—C9—H9 | 107.1 | C18—C19—H19A | 109.5 |
| C11—C10—C9 | 110.26 (13) | C20—C19—H19A | 109.5 |
| C11—C10—H10A | 109.6 | C18—C19—H19B | 109.5 |
| C9—C10—H10A | 109.6 | C20—C19—H19B | 109.5 |
| C11—C10—H10B | 109.6 | H19A—C19—H19B | 108.1 |
| C9—C10—H10B | 109.6 | C19—C20—C15 | 111.66 (12) |
| H10A—C10—H10B | 108.1 | C19—C20—H20A | 109.3 |
| C12—C11—C10 | 111.95 (14) | C15—C20—H20A | 109.3 |
| C12—C11—H11A | 109.2 | C19—C20—H20B | 109.3 |
| C10—C11—H11A | 109.2 | C15—C20—H20B | 109.3 |
| C12—C11—H11B | 109.2 | H20A—C20—H20B | 108 |
| C10—C11—H11B | 109.2 | ||
| C3—C2—C1—C6 | 0.5 (2) | C15—P1—C9—C14 | −179.60 (10) |
| C3—C2—C1—P1 | −177.56 (12) | Se1—P1—C9—C14 | 58.59 (11) |
| C15—P1—C1—C2 | −147.03 (12) | C14—C9—C10—C11 | −56.78 (17) |
| C9—P1—C1—C2 | 98.45 (13) | P1—C9—C10—C11 | 178.02 (11) |
| Se1—P1—C1—C2 | −23.72 (14) | C9—C10—C11—C12 | 55.47 (18) |
| C15—P1—C1—C6 | 34.97 (14) | C10—C11—C12—C13 | −54.77 (19) |
| C9—P1—C1—C6 | −79.55 (14) | C11—C12—C13—C14 | 54.96 (18) |
| Se1—P1—C1—C6 | 158.28 (11) | C12—C13—C14—C9 | −56.65 (17) |
| C1—C2—C3—C4 | −0.8 (2) | C10—C9—C14—C13 | 57.86 (16) |
| C8—N1—C4—C3 | −2.9 (2) | P1—C9—C14—C13 | −174.79 (10) |
| C7—N1—C4—C3 | −166.45 (16) | C1—P1—C15—C16 | −172.11 (10) |
| C8—N1—C4—C5 | 177.77 (15) | C9—P1—C15—C16 | −57.95 (12) |
| C7—N1—C4—C5 | 14.2 (2) | Se1—P1—C15—C16 | 63.44 (11) |
| C2—C3—C4—N1 | −178.82 (15) | C1—P1—C15—C20 | 64.01 (11) |
| C2—C3—C4—C5 | 0.5 (2) | C9—P1—C15—C20 | 178.16 (10) |
| N1—C4—C5—C6 | 179.44 (15) | Se1—P1—C15—C20 | −60.45 (11) |
| C3—C4—C5—C6 | 0.1 (2) | C20—C15—C16—C17 | −53.87 (17) |
| C4—C5—C6—C1 | −0.4 (2) | P1—C15—C16—C17 | −177.46 (11) |
| C2—C1—C6—C5 | 0.1 (2) | C15—C16—C17—C18 | 55.73 (18) |
| P1—C1—C6—C5 | 178.14 (11) | C16—C17—C18—C19 | −57.24 (18) |
| C1—P1—C9—C10 | 60.15 (12) | C17—C18—C19—C20 | 57.01 (19) |
| C15—P1—C9—C10 | −54.31 (12) | C18—C19—C20—C15 | −55.75 (18) |
| Se1—P1—C9—C10 | −176.11 (9) | C16—C15—C20—C19 | 54.09 (16) |
| C1—P1—C9—C14 | −65.15 (12) | P1—C15—C20—C19 | 178.06 (11) |
| H··· | ||||
| C15—H15···Se1i | 1 | 2.71 | 3.6546 (15) | 157. |
| C19—H19A···Se1i | 0.99 | 3.04 | 3.8836 (18) | 143. |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C15—H15⋯Se1i | 1.00 | 2.71 | 3.6546 (15) | 157 |
| C19—H19 | 0.99 | 3.04 | 3.8836 (18) | 143 |
Symmetry code: (i) .