Literature DB >> 23279909

Cytotopic localization by long noncoding RNAs.

Pedro J Batista1, Howard Y Chang.   

Abstract

Cells are highly organized structures. In addition to membrane delimited organelles, proteins and RNAs can organize themselves into specific domains. Some examples include stress granules and subnuclear bodies. This level of organization is essential for the correct execution of multiple processes in the cell, ranging from cell signaling to assembly of structures such as the ribosomes. Here we will review evidence that noncoding RNAs play a critical role in the establishment and regulation of these domains. The unique abilities of RNA to mark the genome in a gene-specific and condition-specific manner and to serve as tethers nominate them as ideal molecular address codes.
Copyright © 2013 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 23279909      PMCID: PMC3633454          DOI: 10.1016/j.ceb.2012.12.001

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  31 in total

1.  Regulating gene expression through RNA nuclear retention.

Authors:  Kannanganattu V Prasanth; Supriya G Prasanth; Zhenyu Xuan; Stephen Hearn; Susan M Freier; C Frank Bennett; Michael Q Zhang; David L Spector
Journal:  Cell       Date:  2005-10-21       Impact factor: 41.582

2.  Selective elimination of messenger RNA prevents an incidence of untimely meiosis.

Authors:  Yuriko Harigaya; Hirotsugu Tanaka; Soichiro Yamanaka; Kayoko Tanaka; Yoshinori Watanabe; Chihiro Tsutsumi; Yuji Chikashige; Yasushi Hiraoka; Akira Yamashita; Masayuki Yamamoto
Journal:  Nature       Date:  2006-07-06       Impact factor: 49.962

3.  Alu element-mediated gene silencing.

Authors:  Ling-Ling Chen; Joshua N DeCerbo; Gordon G Carmichael
Journal:  EMBO J       Date:  2008-05-22       Impact factor: 11.598

4.  Phosphorylation of RNA-binding protein controls cell cycle switch from mitotic to meiotic in fission yeast.

Authors:  Y Watanabe; S Shinozaki-Yabana; Y Chikashige; Y Hiraoka; M Yamamoto
Journal:  Nature       Date:  1997-03-13       Impact factor: 49.962

5.  MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles.

Authors:  Yasnory T F Sasaki; Takashi Ideue; Miho Sano; Toutai Mituyama; Tetsuro Hirose
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-02       Impact factor: 11.205

6.  An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles.

Authors:  Christine M Clemson; John N Hutchinson; Sergio A Sara; Alexander W Ensminger; Archa H Fox; Andrew Chess; Jeanne B Lawrence
Journal:  Mol Cell       Date:  2009-02-12       Impact factor: 17.970

7.  Altered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: functional role of a nuclear noncoding RNA.

Authors:  Ling-Ling Chen; Gordon G Carmichael
Journal:  Mol Cell       Date:  2009-08-28       Impact factor: 17.970

8.  MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles.

Authors:  Hongjae Sunwoo; Marcel E Dinger; Jeremy E Wilusz; Paulo P Amaral; John S Mattick; David L Spector
Journal:  Genome Res       Date:  2008-12-22       Impact factor: 9.043

9.  RNA-assisted nuclear transport of the meiotic regulator Mei2p in fission yeast.

Authors:  A Yamashita; Y Watanabe; N Nukina; M Yamamoto
Journal:  Cell       Date:  1998-10-02       Impact factor: 41.582

10.  Proteomics analysis of the nucleolus in adenovirus-infected cells.

Authors:  Yun W Lam; Vanessa C Evans; Kate J Heesom; Angus I Lamond; David A Matthews
Journal:  Mol Cell Proteomics       Date:  2009-10-07       Impact factor: 5.911

View more
  11 in total

Review 1.  Decoding the RNA structurome.

Authors:  Zhipeng Lu; Howard Y Chang
Journal:  Curr Opin Struct Biol       Date:  2016-02-26       Impact factor: 6.809

Review 2.  X-marks the spot: X-chromosome identification during dosage compensation.

Authors:  Jessica Chery; Erica Larschan
Journal:  Biochim Biophys Acta       Date:  2014-01-07

Review 3.  Long non-coding RNAs: Fine-tuning the developmental responses in plants.

Authors:  Riddhi Datta; Soumitra Paul
Journal:  J Biosci       Date:  2019-09       Impact factor: 1.826

4.  Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre.

Authors:  Ezgi Hacisuleyman; Loyal A Goff; Cole Trapnell; Adam Williams; Jorge Henao-Mejia; Lei Sun; Patrick McClanahan; David G Hendrickson; Martin Sauvageau; David R Kelley; Michael Morse; Jesse Engreitz; Eric S Lander; Mitch Guttman; Harvey F Lodish; Richard Flavell; Arjun Raj; John L Rinn
Journal:  Nat Struct Mol Biol       Date:  2014-01-26       Impact factor: 15.369

Review 5.  Regulation of mRNA transport, localization and translation in the nervous system of mammals (Review).

Authors:  Carlo Maria Di Liegro; Gabriella Schiera; Italia Di Liegro
Journal:  Int J Mol Med       Date:  2014-01-21       Impact factor: 4.101

Review 6.  Functional implications of long non-coding RNAs in the pancreatic islets of Langerhans.

Authors:  Jonathan L S Esguerra; Lena Eliasson
Journal:  Front Genet       Date:  2014-07-07       Impact factor: 4.599

Review 7.  Regulation of alternative splicing by local histone modifications: potential roles for RNA-guided mechanisms.

Authors:  Hua-Lin Zhou; Guangbin Luo; Jo Ann Wise; Hua Lou
Journal:  Nucleic Acids Res       Date:  2013-09-29       Impact factor: 16.971

Review 8.  Long non-coding RNA-dependent transcriptional regulation in neuronal development and disease.

Authors:  Brian S Clark; Seth Blackshaw
Journal:  Front Genet       Date:  2014-06-06       Impact factor: 4.599

9.  The interplay of long non-coding RNAs and MYC in cancer.

Authors:  Michael J Hamilton; Matthew D Young; Silvia Sauer; Ernest Martinez
Journal:  AIMS Biophys       Date:  2015-12-01

10.  Long noncoding RNA Saf and splicing factor 45 increase soluble Fas and resistance to apoptosis.

Authors:  Olga Villamizar; Christopher B Chambers; Janice M Riberdy; Derek A Persons; Andrew Wilber
Journal:  Oncotarget       Date:  2016-03-22
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.