Literature DB >> 23275578

The promiscuous life of plant NUCLEAR FACTOR Y transcription factors.

Katia Petroni1, Roderick W Kumimoto, Nerina Gnesutta, Valentina Calvenzani, Monica Fornari, Chiara Tonelli, Ben F Holt, Roberto Mantovani.   

Abstract

The CCAAT box is one of the most common cis-elements present in eukaryotic promoters and is bound by the transcription factor NUCLEAR FACTOR Y (NF-Y). NF-Y is composed of three subunits, NF-YA, NF-YB, and NF-YC. Unlike animals and fungi, plants have significantly expanded the number of genes encoding NF-Y subunits. We provide a comprehensive classification of NF-Y genes, with a separation of closely related, but distinct, histone fold domain proteins. We additionally review recent experiments that have placed NF-Y at the center of many developmental stress-responsive processes in the plant lineage.

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Year:  2012        PMID: 23275578      PMCID: PMC3556957          DOI: 10.1105/tpc.112.105734

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


  112 in total

1.  The flowering time regulator CONSTANS is recruited to the FLOWERING LOCUS T promoter via a unique cis-element.

Authors:  Shiv B Tiwari; Yu Shen; Han-Chang Chang; Yanli Hou; Amanda Harris; Siu Fong Ma; Megan McPartland; Graham J Hymus; Luc Adam; Colleen Marion; Alemu Belachew; Peter P Repetti; T Lynne Reuber; Oliver J Ratcliffe
Journal:  New Phytol       Date:  2010-04-12       Impact factor: 10.151

2.  Multiple sequence alignment using ClustalW and ClustalX.

Authors:  Julie D Thompson; Toby J Gibson; Des G Higgins
Journal:  Curr Protoc Bioinformatics       Date:  2002-08

3.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

4.  Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis.

Authors:  Gabriela C Pagnussat; Hee-Ju Yu; Quy A Ngo; Sarojam Rajani; Sevugan Mayalagu; Cameron S Johnson; Arnaud Capron; Li-Fen Xie; De Ye; Venkatesan Sundaresan
Journal:  Development       Date:  2005-01-05       Impact factor: 6.868

5.  CONSTANS and the CCAAT box binding complex share a functionally important domain and interact to regulate flowering of Arabidopsis.

Authors:  Stephan Wenkel; Franziska Turck; Kamy Singer; Lionel Gissot; José Le Gourrierec; Alon Samach; George Coupland
Journal:  Plant Cell       Date:  2006-11-30       Impact factor: 11.277

6.  TaNF-YB3 is involved in the regulation of photosynthesis genes in Triticum aestivum.

Authors:  Troy J Stephenson; C Lynne McIntyre; Christopher Collet; Gang-Ping Xue
Journal:  Funct Integr Genomics       Date:  2011-02-16       Impact factor: 3.410

7.  Arabidopsis NF-YB subunits LEC1 and LEC1-LIKE activate transcription by interacting with seed-specific ABRE-binding factors.

Authors:  Akiko Yamamoto; Yasuaki Kagaya; Ryoko Toyoshima; Michiko Kagaya; Shin Takeda; Tsukaho Hattori
Journal:  Plant J       Date:  2009-02-03       Impact factor: 6.417

8.  Isolation of the gene encoding Carrot leafy cotyledon1 and expression analysis during somatic and zygotic embryogenesis.

Authors:  Katsumi Yazawa; Kiminori Takahata; Hiroshi Kamada
Journal:  Plant Physiol Biochem       Date:  2004-03       Impact factor: 4.270

9.  Characterization of leafy cotyledon1-like during embryogenesis in Theobroma cacao L.

Authors:  Laurence Alemanno; Martine Devic; Nicolas Niemenak; Christine Sanier; Jocelyne Guilleminot; Mariannick Rio; Jean-Luc Verdeil; Pascal Montoro
Journal:  Planta       Date:  2007-12-18       Impact factor: 4.116

10.  FT protein acts as a long-range signal in Arabidopsis.

Authors:  Katja E Jaeger; Philip A Wigge
Journal:  Curr Biol       Date:  2007-05-31       Impact factor: 10.834

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  110 in total

1.  Alterations of histone modifications at the senescence-associated gene HvS40 in barley during senescence.

Authors:  Nicole Ay; Bianka Janack; Andreas Fischer; Gunter Reuter; Klaus Humbeck
Journal:  Plant Mol Biol       Date:  2015-08-07       Impact factor: 4.076

2.  The H2A/H2B-like histone-fold domain proteins at the crossroad between chromatin and different DNA metabolisms.

Authors:  Nerina Gnesutta; Marco Nardini; Roberto Mantovani
Journal:  Transcription       Date:  2013-05-16

3.  Deep Sequencing of the Medicago truncatula Root Transcriptome Reveals a Massive and Early Interaction between Nodulation Factor and Ethylene Signals.

Authors:  Estíbaliz Larrainzar; Brendan K Riely; Sang Cheol Kim; Noelia Carrasquilla-Garcia; Hee-Ju Yu; Hyun-Ju Hwang; Mijin Oh; Goon Bo Kim; Anandkumar K Surendrarao; Deborah Chasman; Alireza F Siahpirani; Ramachandra V Penmetsa; Gang-Seob Lee; Namshin Kim; Sushmita Roy; Jeong-Hwan Mun; Douglas R Cook
Journal:  Plant Physiol       Date:  2015-07-14       Impact factor: 8.340

4.  LEC1 sequentially regulates the transcription of genes involved in diverse developmental processes during seed development.

Authors:  Julie M Pelletier; Raymond W Kwong; Soomin Park; Brandon H Le; Russell Baden; Alexandro Cagliari; Meryl Hashimoto; Matthew D Munoz; Robert L Fischer; Robert B Goldberg; John J Harada
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-24       Impact factor: 11.205

5.  Genome-wide association mapping combined with reverse genetics identifies new effectors of low water potential-induced proline accumulation in Arabidopsis.

Authors:  Paul E Verslues; Jesse R Lasky; Thomas E Juenger; Tzu-Wen Liu; M Nagaraj Kumar
Journal:  Plant Physiol       Date:  2013-11-11       Impact factor: 8.340

6.  AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.

Authors:  Haitao Shi; Zhu-Long Chan
Journal:  Plant Signal Behav       Date:  2014

7.  Arabidopsis DPB3-1, a DREB2A interactor, specifically enhances heat stress-induced gene expression by forming a heat stress-specific transcriptional complex with NF-Y subunits.

Authors:  Hikaru Sato; Junya Mizoi; Hidenori Tanaka; Kyonosin Maruyama; Feng Qin; Yuriko Osakabe; Kyoko Morimoto; Teppei Ohori; Kazuya Kusakabe; Maika Nagata; Kazuo Shinozaki; Kazuko Yamaguchi-Shinozaki
Journal:  Plant Cell       Date:  2014-12-09       Impact factor: 11.277

8.  A wheat CCAAT box-binding transcription factor increases the grain yield of wheat with less fertilizer input.

Authors:  Baoyuan Qu; Xue He; Jing Wang; Yanyan Zhao; Wan Teng; An Shao; Xueqiang Zhao; Wenying Ma; Junyi Wang; Bin Li; Zhensheng Li; Yiping Tong
Journal:  Plant Physiol       Date:  2014-12-08       Impact factor: 8.340

9.  Identification and characterization of NF-Y transcription factor families in Canola (Brassica napus L.).

Authors:  Mingxiang Liang; Xiangzhen Yin; Zhongyuan Lin; Qingsong Zheng; Guohong Liu; Gengmao Zhao
Journal:  Planta       Date:  2013-10-06       Impact factor: 4.116

Review 10.  Emerging tools, concepts and ideas to track the modulator genes underlying plant drought adaptive traits: An overview.

Authors:  Parvathi Ms; Karaba N Nataraja
Journal:  Plant Signal Behav       Date:  2016
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