Literature DB >> 23274976

Fungal community associated with genetically modified poplar during metal phytoremediation.

Moonsuk Hur1, Young Woon Lim, Jae Jeong Yu, Se Uk Cheon, Young Im Choi, Seok-Hwan Yoon, Sang-Cheol Park, Dong-Il Kim, Hana Yi.   

Abstract

Due to the increasing demand for phytoremediation, many transgenic poplars have been developed to enhance the bioremediation of heavy metals. However, structural changes to indigenous fungal communities by genetically modified organisms (GMO) presents a major ecological issue, due to the important role of fungi for plant growth in natural environments. To evaluate the effect of GM plant use on environmental fungal soil communities, extensive sequencing-based community analysis was conducted, while controlling the influence of plant clonality, plant age, soil condition, and harvesting season. The rhizosphere soils of GM and wild type (WT) poplars at a range of growth stages were sampled together with unplanted, contaminated soil, and the fungal community structures were investigated by pyrosequencing the D1/D2 region of the 28S rRNA gene. The results show that the overall structure of the rhizosphere fungal community was not significantly influenced by GM poplars. However, the presence of GM specific taxa, and faster rate of community change during poplar growth, appeared to be characteristic of the GM plant-induced effects on soil-born fungal communities. The results of this study provide additional information about the potential effects of GM poplar trees aged 1.5-3 years, on the soil fungal community.

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Year:  2012        PMID: 23274976     DOI: 10.1007/s12275-012-2491-9

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  22 in total

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2.  Transgenic plants in phytoremediation: recent advances and new possibilities.

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Journal:  Environ Sci Technol       Date:  2005-12-15       Impact factor: 9.028

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Journal:  Appl Environ Microbiol       Date:  2008-06-13       Impact factor: 4.792

5.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

6.  Structure of the large ribosomal subunit RNA of Phytophthora megasperma, and phylogeny of the oomycetes.

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Journal:  FEBS Lett       Date:  1994-01-31       Impact factor: 4.124

7.  Estimating terrestrial biodiversity through extrapolation.

Authors:  R K Colwell; J A Coddington
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1994-07-29       Impact factor: 6.237

8.  Effects of transgenic fructan-producing potatoes on the community structure of rhizosphere and phyllosphere bacteria.

Authors:  Regina Becker; Undine Behrendt; Bernd Hommel; Siegfried Kropf; Andreas Ulrich
Journal:  FEMS Microbiol Ecol       Date:  2008-07-24       Impact factor: 4.194

9.  Development of transgenic yellow poplar for mercury phytoremediation.

Authors:  C L Rugh; J F Senecoff; R B Meagher; S A Merkle
Journal:  Nat Biotechnol       Date:  1998-10       Impact factor: 54.908

10.  Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data.

Authors:  Micah Hamady; Catherine Lozupone; Rob Knight
Journal:  ISME J       Date:  2009-08-27       Impact factor: 10.302

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  4 in total

1.  Identifying airborne fungi in Seoul, Korea using metagenomics.

Authors:  Seung-Yoon Oh; Jonathan J Fong; Myung Soo Park; Limseok Chang; Young Woon Lim
Journal:  J Microbiol       Date:  2014-04-11       Impact factor: 3.422

2.  Distinct Communities of Poplar Endophytes on an Unpolluted and a Risk Element-Polluted Site and Their Plant Growth-Promoting Potential In Vitro.

Authors:  C S Schmidt; P Lovecká; L Mrnka; A Vychodilová; M Strejček; M Fenclová; K Demnerová
Journal:  Microb Ecol       Date:  2017-11-10       Impact factor: 4.552

3.  Actinorhizal Alder Phytostabilization Alters Microbial Community Dynamics in Gold Mine Waste Rock from Northern Quebec: A Greenhouse Study.

Authors:  Katrina L Callender; Sébastien Roy; Damase P Khasa; Lyle G Whyte; Charles W Greer
Journal:  PLoS One       Date:  2016-02-29       Impact factor: 3.240

4.  Tracking fungal community responses to maize plants by DNA- and RNA-based pyrosequencing.

Authors:  Eiko E Kuramae; Erik Verbruggen; Remy Hillekens; Mattias de Hollander; Wilfred F M Röling; Marcel G A van der Heijden; George A Kowalchuk
Journal:  PLoS One       Date:  2013-07-18       Impact factor: 3.240

  4 in total

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