Literature DB >> 23268228

The excludon: a new concept in bacterial antisense RNA-mediated gene regulation.

Nina Sesto1, Omri Wurtzel, Cristel Archambaud, Rotem Sorek, Pascale Cossart.   

Abstract

In recent years, non-coding RNAs have emerged as key regulators of gene expression. Among these RNAs, the antisense RNAs (asRNAs) are particularly abundant, but in most cases the function and mechanism of action for a particular asRNA remains elusive. Here, we highlight a recently discovered paradigm termed the excludon, which defines a genomic locus encoding an unusually long asRNA that spans divergent genes or operons with related or opposing functions. Because these asRNAs can inhibit the expression of one operon while functioning as an mRNA for the adjacent operon, they act as fine-tuning regulatory switches in bacteria.

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Year:  2012        PMID: 23268228     DOI: 10.1038/nrmicro2934

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  51 in total

1.  Genetic regulatory mechanisms in the synthesis of proteins.

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Journal:  J Mol Biol       Date:  1961-06       Impact factor: 5.469

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Authors:  Pierre Nicolas; Ulrike Mäder; Etienne Dervyn; Tatiana Rochat; Aurélie Leduc; Nathalie Pigeonneau; Elena Bidnenko; Elodie Marchadier; Mark Hoebeke; Stéphane Aymerich; Dörte Becher; Paola Bisicchia; Eric Botella; Olivier Delumeau; Geoff Doherty; Emma L Denham; Mark J Fogg; Vincent Fromion; Anne Goelzer; Annette Hansen; Elisabeth Härtig; Colin R Harwood; Georg Homuth; Hanne Jarmer; Matthieu Jules; Edda Klipp; Ludovic Le Chat; François Lecointe; Peter Lewis; Wolfram Liebermeister; Anika March; Ruben A T Mars; Priyanka Nannapaneni; David Noone; Susanne Pohl; Bernd Rinn; Frank Rügheimer; Praveen K Sappa; Franck Samson; Marc Schaffer; Benno Schwikowski; Leif Steil; Jörg Stülke; Thomas Wiegert; Kevin M Devine; Anthony J Wilkinson; Jan Maarten van Dijl; Michael Hecker; Uwe Völker; Philippe Bessières; Philippe Noirot
Journal:  Science       Date:  2012-03-02       Impact factor: 47.728

Review 3.  CRISPR--a widespread system that provides acquired resistance against phages in bacteria and archaea.

Authors:  Rotem Sorek; Victor Kunin; Philip Hugenholtz
Journal:  Nat Rev Microbiol       Date:  2008-03       Impact factor: 60.633

4.  Transcriptome complexity in a genome-reduced bacterium.

Authors:  Marc Güell; Vera van Noort; Eva Yus; Wei-Hua Chen; Justine Leigh-Bell; Konstantinos Michalodimitrakis; Takuji Yamada; Manimozhiyan Arumugam; Tobias Doerks; Sebastian Kühner; Michaela Rode; Mikita Suyama; Sabine Schmidt; Anne-Claude Gavin; Peer Bork; Luis Serrano
Journal:  Science       Date:  2009-11-27       Impact factor: 47.728

5.  Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA.

Authors:  Pierre Mandin; Susan Gottesman
Journal:  EMBO J       Date:  2010-08-03       Impact factor: 11.598

6.  Promoter occlusion: transcription through a promoter may inhibit its activity.

Authors:  S Adhya; M Gottesman
Journal:  Cell       Date:  1982-07       Impact factor: 41.582

7.  Translational control of IS10 transposition.

Authors:  R W Simons; N Kleckner
Journal:  Cell       Date:  1983-09       Impact factor: 41.582

Review 8.  The critical role of RNA processing and degradation in the control of gene expression.

Authors:  Cecília M Arraiano; José M Andrade; Susana Domingues; Inês B Guinote; Michal Malecki; Rute G Matos; Ricardo N Moreira; Vânia Pobre; Filipa P Reis; Margarida Saramago; Inês J Silva; Sandra C Viegas
Journal:  FEMS Microbiol Rev       Date:  2010-06-24       Impact factor: 16.408

9.  RNase III participates in GadY-dependent cleavage of the gadX-gadW mRNA.

Authors:  Jason A Opdyke; Elizabeth M Fozo; Matthew R Hemm; Gisela Storz
Journal:  J Mol Biol       Date:  2010-12-13       Impact factor: 5.469

10.  The intracellular sRNA transcriptome of Listeria monocytogenes during growth in macrophages.

Authors:  Mobarak A Mraheil; André Billion; Walid Mohamed; Krishnendu Mukherjee; Carsten Kuenne; Jordan Pischimarov; Christian Krawitz; Julia Retey; Thomas Hartsch; Trinad Chakraborty; Torsten Hain
Journal:  Nucleic Acids Res       Date:  2011-01-29       Impact factor: 16.971

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  76 in total

1.  Cluster of genes that encode positive and negative elements influencing filament length in a heterocyst-forming cyanobacterium.

Authors:  Victoria Merino-Puerto; Antonia Herrero; Enrique Flores
Journal:  J Bacteriol       Date:  2013-09       Impact factor: 3.490

Review 2.  RNA-mediated regulation in pathogenic bacteria.

Authors:  Isabelle Caldelari; Yanjie Chao; Pascale Romby; Jörg Vogel
Journal:  Cold Spring Harb Perspect Med       Date:  2013-09-01       Impact factor: 6.915

Review 3.  Gene regulation by antisense transcription.

Authors:  Vicent Pelechano; Lars M Steinmetz
Journal:  Nat Rev Genet       Date:  2013-11-12       Impact factor: 53.242

Review 4.  RNA-Seq unveils new attributes of the heterogeneous Salmonella-host cell communication.

Authors:  Francisco García-Del Portillo; M Graciela Pucciarelli
Journal:  RNA Biol       Date:  2017-01-03       Impact factor: 4.652

5.  Differential RNA-seq of Vibrio cholerae identifies the VqmR small RNA as a regulator of biofilm formation.

Authors:  Kai Papenfort; Konrad U Förstner; Jian-Ping Cong; Cynthia M Sharma; Bonnie L Bassler
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-02       Impact factor: 11.205

6.  Post-transcriptional regulation by distal Shine-Dalgarno sequences in the grpE-dnaK intergenic region of Streptococcus mutans.

Authors:  Sara R Palmer; Robert A Burne
Journal:  Mol Microbiol       Date:  2015-09-04       Impact factor: 3.501

7.  Global transcriptional start site mapping using differential RNA sequencing reveals novel antisense RNAs in Escherichia coli.

Authors:  Maureen K Thomason; Thorsten Bischler; Sara K Eisenbart; Konrad U Förstner; Aixia Zhang; Alexander Herbig; Kay Nieselt; Cynthia M Sharma; Gisela Storz
Journal:  J Bacteriol       Date:  2014-09-29       Impact factor: 3.490

8.  Mechanisms of Evolutionary Innovation Point to Genetic Control Logic as the Key Difference Between Prokaryotes and Eukaryotes.

Authors:  William Bains; Dirk Schulze-Makuch
Journal:  J Mol Evol       Date:  2015-07-25       Impact factor: 2.395

9.  Widespread Utilization of Peptide Communication in Phages Infecting Soil and Pathogenic Bacteria.

Authors:  Avigail Stokar-Avihail; Nitzan Tal; Zohar Erez; Anna Lopatina; Rotem Sorek
Journal:  Cell Host Microbe       Date:  2019-05-08       Impact factor: 21.023

Review 10.  Pervasive transcription: illuminating the dark matter of bacterial transcriptomes.

Authors:  Joseph T Wade; David C Grainger
Journal:  Nat Rev Microbiol       Date:  2014-07-28       Impact factor: 60.633

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