Literature DB >> 23266000

A structural framework for replication origin opening by AAA+ initiation factors.

Karl E Duderstadt1, James M Berger.   

Abstract

ATP-dependent initiation factors help process replication origins and coordinate replisome assembly to control the onset of DNA synthesis. Although the specific properties and regulatory mechanisms of initiator proteins can vary greatly between different organisms, certain nucleotide-binding elements and assembly patterns appear preserved not only within the three domains of cellular life (bacteria, archaea, and eukaryotes), but also with certain classes of double-stranded DNA viruses. Structural studies of replication initiation proteins, both as higher-order oligomers and in complex with cognate DNA substrates, are revealing how an evolutionarily related ATPase fold can support different modes of macromolecular assembly and function. Comparative studies between initiation systems in turn provide clues as to how duplex origin regions may be melted during initiation events.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 23266000      PMCID: PMC3572333          DOI: 10.1016/j.sbi.2012.11.012

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  83 in total

1.  Structural basis of replication origin recognition by the DnaA protein.

Authors:  Norie Fujikawa; Hitoshi Kurumizaka; Osamu Nureki; Takaho Terada; Mikako Shirouzu; Tsutomu Katayama; Shigeyuki Yokoyama
Journal:  Nucleic Acids Res       Date:  2003-04-15       Impact factor: 16.971

2.  A novel ring-like complex of Xenopus proteins essential for the initiation of DNA replication.

Authors:  Yumiko Kubota; Youhei Takase; Yasunori Komori; Yoshitami Hashimoto; Toshiaki Arata; Yoichiro Kamimura; Hiroyuki Araki; Haruhiko Takisawa
Journal:  Genes Dev       Date:  2003-05-01       Impact factor: 11.361

3.  The structure of bacterial DnaA: implications for general mechanisms underlying DNA replication initiation.

Authors:  Jan P Erzberger; Michelle M Pirruccello; James M Berger
Journal:  EMBO J       Date:  2002-09-16       Impact factor: 11.598

4.  Protein-DNA interactions at a yeast replication origin.

Authors:  J F Diffley; J H Cocker
Journal:  Nature       Date:  1992-05-14       Impact factor: 49.962

5.  ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex.

Authors:  S P Bell; B Stillman
Journal:  Nature       Date:  1992-05-14       Impact factor: 49.962

6.  Targeting the E1 replication protein to the papillomavirus origin of replication by complex formation with the E2 transactivator.

Authors:  I J Mohr; R Clark; S Sun; E J Androphy; P MacPherson; M R Botchan
Journal:  Science       Date:  1990-12-21       Impact factor: 47.728

7.  Replicatively active complexes of DnaA protein and the Escherichia coli chromosomal origin observed in the electron microscope.

Authors:  E Crooke; R Thresher; D S Hwang; J Griffith; A Kornberg
Journal:  J Mol Biol       Date:  1993-09-05       Impact factor: 5.469

8.  Two steps in the assembly of complexes at yeast replication origins in vivo.

Authors:  J F Diffley; J H Cocker; S J Dowell; A Rowley
Journal:  Cell       Date:  1994-07-29       Impact factor: 41.582

9.  The DNA unwinding element: a novel, cis-acting component that facilitates opening of the Escherichia coli replication origin.

Authors:  D Kowalski; M J Eddy
Journal:  EMBO J       Date:  1989-12-20       Impact factor: 11.598

10.  cdt1 is an essential target of the Cdc10/Sct1 transcription factor: requirement for DNA replication and inhibition of mitosis.

Authors:  J F Hofmann; D Beach
Journal:  EMBO J       Date:  1994-01-15       Impact factor: 11.598

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  32 in total

1.  Structure of the eukaryotic MCM complex at 3.8 Å.

Authors:  Ningning Li; Yuanliang Zhai; Yixiao Zhang; Wanqiu Li; Maojun Yang; Jianlin Lei; Bik-Kwoon Tye; Ning Gao
Journal:  Nature       Date:  2015-07-29       Impact factor: 49.962

Review 2.  The cell cycle of archaea.

Authors:  Ann-Christin Lindås; Rolf Bernander
Journal:  Nat Rev Microbiol       Date:  2013-07-29       Impact factor: 60.633

Review 3.  The Eukaryotic CMG Helicase at the Replication Fork: Emerging Architecture Reveals an Unexpected Mechanism.

Authors:  Huilin Li; Michael E O'Donnell
Journal:  Bioessays       Date:  2018-02-06       Impact factor: 4.345

4.  The Arg Fingers of Key DnaA Protomers Are Oriented Inward within the Replication Origin oriC and Stimulate DnaA Subcomplexes in the Initiation Complex.

Authors:  Yasunori Noguchi; Yukari Sakiyama; Hironori Kawakami; Tsutomu Katayama
Journal:  J Biol Chem       Date:  2015-06-30       Impact factor: 5.157

5.  Defining the crucial domain and amino acid residues in bacterial Lon protease for DNA binding and processing of DNA-interacting substrates.

Authors:  Anna Karlowicz; Katarzyna Wegrzyn; Marta Gross; Dagmara Kaczynska; Malgorzata Ropelewska; Małgorzata Siemiątkowska; Janusz M Bujnicki; Igor Konieczny
Journal:  J Biol Chem       Date:  2017-03-14       Impact factor: 5.157

Review 6.  Protein-induced DNA linking number change by sequence-specific DNA binding proteins and its biological effects.

Authors:  Fenfei Leng
Journal:  Biophys Rev       Date:  2016-06-10

Review 7.  Protein-induced DNA linking number change by sequence-specific DNA binding proteins and its biological effects.

Authors:  Fenfei Leng
Journal:  Biophys Rev       Date:  2016-11-14

8.  Fulfilling the dream of a perfect genome editing tool.

Authors:  Maria Spies
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-02       Impact factor: 11.205

9.  Structural basis for replication origin unwinding by an initiator primase of plasmid ColE2-P9: duplex DNA unwinding by a single protein.

Authors:  Hiroshi Itou; Masaru Yagura; Yasuo Shirakihara; Tateo Itoh
Journal:  J Biol Chem       Date:  2014-12-23       Impact factor: 5.157

10.  Requirement for the E1 Helicase C-Terminal Domain in Papillomavirus DNA Replication In Vivo.

Authors:  Monika Bergvall; David Gagnon; Steve Titolo; Michaël Lehoux; Claudia M D'Abramo; Thomas Melendy; Jacques Archambault
Journal:  J Virol       Date:  2016-01-06       Impact factor: 5.103

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