Literature DB >> 23263957

Reconstitution of a thermostable xylan-degrading enzyme mixture from the bacterium Caldicellulosiruptor bescii.

Xiaoyun Su1, Yejun Han, Dylan Dodd, Young Hwan Moon, Shosuke Yoshida, Roderick I Mackie, Isaac K O Cann.   

Abstract

Xylose, the major constituent of xylans, as well as the side chain sugars, such as arabinose, can be metabolized by engineered yeasts into ethanol. Therefore, xylan-degrading enzymes that efficiently hydrolyze xylans will add value to cellulases used in hydrolysis of plant cell wall polysaccharides for conversion to biofuels. Heterogeneous xylan is a complex substrate, and it requires multiple enzymes to release its constituent sugars. However, the components of xylan-degrading enzymes are often individually characterized, leading to a dearth of research that analyzes synergistic actions of the components of xylan-degrading enzymes. In the present report, six genes predicted to encode components of the xylan-degrading enzymes of the thermophilic bacterium Caldicellulosiruptor bescii were expressed in Escherichia coli, and the recombinant proteins were investigated as individual enzymes and also as a xylan-degrading enzyme cocktail. Most of the component enzymes of the xylan-degrading enzyme mixture had similar optimal pH (5.5 to ∼6.5) and temperature (75 to ∼90°C), and this facilitated their investigation as an enzyme cocktail for deconstruction of xylans. The core enzymes (two endoxylanases and a β-xylosidase) exhibited high turnover numbers during catalysis, with the two endoxylanases yielding estimated k(cat) values of ∼8,000 and ∼4,500 s(-1), respectively, on soluble wheat arabinoxylan. Addition of side chain-cleaving enzymes to the core enzymes increased depolymerization of a more complex model substrate, oat spelt xylan. The C. bescii xylan-degrading enzyme mixture effectively hydrolyzes xylan at 65 to 80°C and can serve as a basal mixture for deconstruction of xylans in bioenergy feedstock at high temperatures.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 23263957      PMCID: PMC3591937          DOI: 10.1128/AEM.03265-12

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  39 in total

1.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

2.  Yeast surface display of trifunctional minicellulosomes for simultaneous saccharification and fermentation of cellulose to ethanol.

Authors:  Fei Wen; Jie Sun; Huimin Zhao
Journal:  Appl Environ Microbiol       Date:  2009-12-18       Impact factor: 4.792

3.  Caldicellulosiruptor obsidiansis sp. nov., an anaerobic, extremely thermophilic, cellulolytic bacterium isolated from Obsidian Pool, Yellowstone National Park.

Authors:  Scott D Hamilton-Brehm; Jennifer J Mosher; Tatiana Vishnivetskaya; Mircea Podar; Sue Carroll; Steve Allman; Tommy J Phelps; Martin Keller; James G Elkins
Journal:  Appl Environ Microbiol       Date:  2009-12-18       Impact factor: 4.792

4.  Granular layer in the periplasmic space of gram-positive bacteria and fine structures of Enterococcus gallinarum and Streptococcus gordonii septa revealed by cryo-electron microscopy of vitreous sections.

Authors:  Benoît Zuber; Marisa Haenni; Tânia Ribeiro; Kathrin Minnig; Fátima Lopes; Philippe Moreillon; Jacques Dubochet
Journal:  J Bacteriol       Date:  2006-09       Impact factor: 3.490

5.  The X6 "thermostabilizing" domains of xylanases are carbohydrate-binding modules: structure and biochemistry of the Clostridium thermocellum X6b domain.

Authors:  S J Charnock; D N Bolam; J P Turkenburg; H J Gilbert; L M Ferreira; G J Davies; C M Fontes
Journal:  Biochemistry       Date:  2000-05-02       Impact factor: 3.162

6.  Enzymatic hydrolysis of wheat arabinoxylan by a recombinant "minimal" enzyme cocktail containing beta-xylosidase and novel endo-1,4-beta-xylanase and alpha-l-arabinofuranosidase activities.

Authors:  Hanne R Sørensen; Sven Pedersen; Christel T Jørgensen; Anne S Meyer
Journal:  Biotechnol Prog       Date:  2007 Jan-Feb

Review 7.  Zymomonas mobilis for fuel ethanol and higher value products.

Authors:  P L Rogers; Y J Jeon; K J Lee; H G Lawford
Journal:  Adv Biochem Eng Biotechnol       Date:  2007       Impact factor: 2.635

8.  Biochemical analysis of a beta-D-xylosidase and a bifunctional xylanase-ferulic acid esterase from a xylanolytic gene cluster in Prevotella ruminicola 23.

Authors:  Dylan Dodd; Svetlana A Kocherginskaya; M Ashley Spies; Kyle E Beery; Charles A Abbas; Roderick I Mackie; Isaac K O Cann
Journal:  J Bacteriol       Date:  2009-03-20       Impact factor: 3.490

9.  Supplementing with non-glycoside hydrolase proteins enhances enzymatic deconstruction of plant biomass.

Authors:  Xiaoyun Su; Jing Zhang; Roderick I Mackie; Isaac K O Cann
Journal:  PLoS One       Date:  2012-08-27       Impact factor: 3.240

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

View more
  15 in total

Review 1.  Thermophilic Degradation of Hemicellulose, a Critical Feedstock in the Production of Bioenergy and Other Value-Added Products.

Authors:  Isaac Cann; Gabriel V Pereira; Ahmed M Abdel-Hamid; Heejin Kim; Daniel Wefers; Boniface B Kayang; Tamotsu Kanai; Takaaki Sato; Rafael C Bernardi; Haruyuki Atomi; Roderick I Mackie
Journal:  Appl Environ Microbiol       Date:  2020-03-18       Impact factor: 4.792

2.  The N-Terminal GH10 Domain of a Multimodular Protein from Caldicellulosiruptor bescii Is a Versatile Xylanase/β-Glucanase That Can Degrade Crystalline Cellulose.

Authors:  Xianli Xue; Rong Wang; Tao Tu; Pengjun Shi; Rui Ma; Huiying Luo; Bin Yao; Xiaoyun Su
Journal:  Appl Environ Microbiol       Date:  2015-03-27       Impact factor: 4.792

3.  SGNH hydrolase-type esterase domain containing Cbes-AcXE2: a novel and thermostable acetyl xylan esterase from Caldicellulosiruptor bescii.

Authors:  Surabhi Soni; Sneha S Sathe; Annamma A Odaneth; Arvind M Lali; Sanjeev K Chandrayan
Journal:  Extremophiles       Date:  2017-04-25       Impact factor: 2.395

Review 4.  The biology and biotechnology of the genus Caldicellulosiruptor: recent developments in 'Caldi World'.

Authors:  Laura L Lee; James R Crosby; Gabriel M Rubinstein; Tunyaboon Laemthong; Ryan G Bing; Christopher T Straub; Michael W W Adams; Robert M Kelly
Journal:  Extremophiles       Date:  2019-07-29       Impact factor: 2.395

5.  Insights into the roles of non-catalytic residues in the active site of a GH10 xylanase with activity on cellulose.

Authors:  Yindi Chu; Tao Tu; Leena Penttinen; Xianli Xue; Xiaoyu Wang; Zhuolin Yi; Li Gong; Juha Rouvinen; Huiying Luo; Nina Hakulinen; Bin Yao; Xiaoyun Su
Journal:  J Biol Chem       Date:  2017-10-03       Impact factor: 5.157

Review 6.  Anaerobic thermophiles.

Authors:  Francesco Canganella; Juergen Wiegel
Journal:  Life (Basel)       Date:  2014-02-26

7.  Biochemical characterization of two thermostable xylanolytic enzymes encoded by a gene cluster of Caldicellulosiruptor owensensis.

Authors:  Shuofu Mi; Xiaojing Jia; Jinzhi Wang; Weibo Qiao; Xiaowei Peng; Yejun Han
Journal:  PLoS One       Date:  2014-08-15       Impact factor: 3.240

8.  Heterologous expression of family 10 xylanases from Acidothermus cellulolyticus enhances the exoproteome of Caldicellulosiruptor bescii and growth on xylan substrates.

Authors:  Sun-Ki Kim; Daehwan Chung; Michael E Himmel; Yannick J Bomble; Janet Westpheling
Journal:  Biotechnol Biofuels       Date:  2016-08-22       Impact factor: 6.040

9.  Seven N-terminal residues of a thermophilic xylanase are sufficient to confer hyperthermostability on its mesophilic counterpart.

Authors:  Shan Zhang; Yongzhi He; Haiying Yu; Zhiyang Dong
Journal:  PLoS One       Date:  2014-01-30       Impact factor: 3.240

10.  Identification of the C-Terminal GH5 Domain from CbCel9B/Man5A as the First Glycoside Hydrolase with Thermal Activation Property from a Multimodular Bifunctional Enzyme.

Authors:  Rong Wang; Li Gong; Xianli Xue; Xing Qin; Rui Ma; Huiying Luo; Yongjie Zhang; Bin Yao; Xiaoyun Su
Journal:  PLoS One       Date:  2016-06-03       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.