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Literature DB >> 2326191

Information content of Caenorhabditis elegans splice site sequences varies with intron length.

Abstract

A database of sequences of 139 introns from the nematode Caenorhabditis elegans was analyzed using the information measure of Schneider et al. (1986) J. Mol. Biol. 128: 415-431. Statistically significant information is encoded by at least the first 30 nt and last 20 nt of C. elegans introns. Both the quantity and the distribution of information in the 5' splice site sequences differs between the typical short (length less than 75 nt) and rarer long (length greater than 75 nt) introns, with the 5 sites of long introns containing approximately one bit more information. 3' splice site sequences of long and short C. elegans introns differ significantly in the region between -20 and -10 nt.

Entities: Species

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Year: 1990 PMID： 2326191 PMCID： PMC330518 DOI： 10.1093/nar/18.6.1509

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

37 in total

1. Sequence of an unusually large protein implicated in regulation of myosin activity in C. elegans.

Authors: G M Benian; J E Kiff; N Neckelmann; D G Moerman; R H Waterston
Journal: Nature Date: 1989-11-02 Impact factor: 49.962

2. Wild-type and mutant actin genes in Caenorhabditis elegans.

Authors: M Krause; M Wild; B Rosenzweig; D Hirsh
Journal: J Mol Biol Date: 1989-08-05 Impact factor: 5.469

3. A catalogue of splice junction and putative branch point sequences from plant introns.

Authors: J W Brown
Journal: Nucleic Acids Res Date: 1986-12-22 Impact factor: 16.971

4. A novel calmodulin-like gene from the nematode Caenorhabditis elegans.

Authors: M Salvato; J Sulston; D Albertson; S Brenner
Journal: J Mol Biol Date: 1986-08-05 Impact factor: 5.469

5. Information content of binding sites on nucleotide sequences.

Authors: T D Schneider; G D Stormo; L Gold; A Ehrenfeucht
Journal: J Mol Biol Date: 1986-04-05 Impact factor: 5.469

6. A minimal intron length but no specific internal sequence is required for splicing the large rabbit beta-globin intron.

Authors: B Wieringa; E Hofer; C Weissmann
Journal: Cell Date: 1984-07 Impact factor: 41.582

7. Protein structural domains in the Caenorhabditis elegans unc-54 myosin heavy chain gene are not separated by introns.

Authors: J Karn; S Brenner; L Barnett
Journal: Proc Natl Acad Sci U S A Date: 1983-07 Impact factor: 11.205

8. The glyceraldehyde-3-phosphate dehydrogenase gene family in the nematode, Caenorhabditis elegans: isolation and characterization of one of the genes.

Authors: P O Yarbrough; M A Hayden; L A Dunn; P S Vermersch; M R Klass; R M Hecht
Journal: Biochim Biophys Acta Date: 1987-01-28

9. The nucleotide sequence of a nematode vitellogenin gene.

Authors: J Spieth; K Denison; E Zucker; T Blumenthal
Journal: Nucleic Acids Res Date: 1985-10-11 Impact factor: 16.971

10. Locus encoding a family of small heat shock genes in Caenorhabditis elegans: two genes duplicated to form a 3.8-kilobase inverted repeat.

Authors: R H Russnak; E P Candido
Journal: Mol Cell Biol Date: 1985-06 Impact factor: 4.272

38 in total

10. Coding properties of Oxytricha trifallax (Sterkiella histriomuscorum) macronuclear chromosomes: analysis of a pilot genome project.

Authors: Andre R O Cavalcanti; Nicholas A Stover; Lorenzo Orecchia; Thomas G Doak; Laura F Landweber
Journal: Chromosoma Date: 2004-07-16 Impact factor: 4.316

Information content of Caenorhabditis elegans splice site sequences varies with intron length.

1. Sequence of an unusually large protein implicated in regulation of myosin activity in C. elegans.

2. Wild-type and mutant actin genes in Caenorhabditis elegans.

3. A catalogue of splice junction and putative branch point sequences from plant introns.

4. A novel calmodulin-like gene from the nematode Caenorhabditis elegans.

5. Information content of binding sites on nucleotide sequences.

6. A minimal intron length but no specific internal sequence is required for splicing the large rabbit beta-globin intron.

7. Protein structural domains in the Caenorhabditis elegans unc-54 myosin heavy chain gene are not separated by introns.

8. The glyceraldehyde-3-phosphate dehydrogenase gene family in the nematode, Caenorhabditis elegans: isolation and characterization of one of the genes.

9. The nucleotide sequence of a nematode vitellogenin gene.

10. Locus encoding a family of small heat shock genes in Caenorhabditis elegans: two genes duplicated to form a 3.8-kilobase inverted repeat.

1. Isolation and characterization of the activated B-cell factor 1 homolog in Caenorhabditis elegans.

2. Evidence for splice site pairing via intron definition in Schizosaccharomyces pombe.

3. Ordered partitioning reveals extended splice-site consensus information.

Review 4. Information contents and dinucleotide compositions of plant intron sequences vary with evolutionary origin.

5. Splicing signals in Drosophila: intron size, information content, and consensus sequences.

6. Changes in exon-intron structure during vertebrate evolution affect the splicing pattern of exons.

7. Relational databases: a transparent framework for encouraging biology students to think informatically.

8. Gene expression, intron density, and splice site strength in Drosophila and Caenorhabditis.

9. Aberrant pre-mRNA maturation is caused by LINE insertions into introns of the white gene of Drosophila melanogaster.

10. Coding properties of Oxytricha trifallax (Sterkiella histriomuscorum) macronuclear chromosomes: analysis of a pilot genome project.