Literature DB >> 23256782

Distinguishing the chemical moiety of phosphoenolpyruvate that contributes to allostery in muscle pyruvate kinase.

James M Urness1, Kelly M Clapp, J Cody Timmons, Xinyan Bai, Nalin Chandrasoma, Keith R Buszek, Aron W Fenton.   

Abstract

A series of substrate analogues has been used to determine which chemical moieties of the substrate phosphoenolpyruvate (PEP) contribute to the allosteric inhibition of rabbit muscle pyruvate kinase by phenylalanine. Replacing the carboxyl group of the substrate with a methyl alcohol or removing the phosphate altogether greatly reduces substrate affinity. However, removal of the carboxyl group is the only modification tested that removes the ability to allosterically reduce the level of Phe binding. From this, it can be concluded that the carboxyl group of PEP is responsible for energetic coupling with Phe binding in the allosteric sites.

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Year:  2012        PMID: 23256782      PMCID: PMC3548419          DOI: 10.1021/bi301628k

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  18 in total

1.  Differentiating a ligand's chemical requirements for allosteric interactions from those for protein binding. Phenylalanine inhibition of pyruvate kinase.

Authors:  Rachel Williams; Todd Holyoak; Gissel McDonald; Chunshan Gui; Aron W Fenton
Journal:  Biochemistry       Date:  2006-05-02       Impact factor: 3.162

2.  Kinetic analysis of enzyme reactions. II. The potassium activation and calcium inhibition of pyruvic phosphoferase.

Authors:  J F KACHMAR; P D BOYER
Journal:  J Biol Chem       Date:  1953-02       Impact factor: 5.157

3.  Structural basis for tumor pyruvate kinase M2 allosteric regulation and catalysis.

Authors:  Jill D Dombrauckas; Bernard D Santarsiero; Andrew D Mesecar
Journal:  Biochemistry       Date:  2005-07-12       Impact factor: 3.162

4.  Ligand-induced domain movement in pyruvate kinase: structure of the enzyme from rabbit muscle with Mg2+, K+, and L-phospholactate at 2.7 A resolution.

Authors:  T M Larsen; M M Benning; G E Wesenberg; I Rayment; G H Reed
Journal:  Arch Biochem Biophys       Date:  1997-09-15       Impact factor: 4.013

5.  Amino acid effector binding to rabbit muscle pyruvate kinase.

Authors:  F J Kayne; N C Price
Journal:  Arch Biochem Biophys       Date:  1973-11       Impact factor: 4.013

6.  Pyruvate kinase revisited: the activating effect of K+.

Authors:  Jesús Oria-Hernández; Nallely Cabrera; Ruy Pérez-Montfort; Leticia Ramírez-Silva
Journal:  J Biol Chem       Date:  2005-09-07       Impact factor: 5.157

7.  Measurement of ligand-protein interaction by electrophoretic and spectroscopic techniques.

Authors:  R W Oberfelder; J C Lee
Journal:  Methods Enzymol       Date:  1985       Impact factor: 1.600

8.  Structural and functional linkages between subunit interfaces in mammalian pyruvate kinase.

Authors:  J O Wooll; R H Friesen; M A White; S J Watowich; R O Fox; J C Lee; E W Czerwinski
Journal:  J Mol Biol       Date:  2001-09-21       Impact factor: 5.469

9.  The monovalent cation requirement of rabbit muscle pyruvate kinase is eliminated by substitution of lysine for glutamate 117.

Authors:  L T Laughlin; G H Reed
Journal:  Arch Biochem Biophys       Date:  1997-12-15       Impact factor: 4.013

10.  Structure of rabbit muscle pyruvate kinase complexed with Mn2+, K+, and pyruvate.

Authors:  T M Larsen; L T Laughlin; H M Holden; I Rayment; G H Reed
Journal:  Biochemistry       Date:  1994-05-24       Impact factor: 3.162

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  7 in total

1.  Whole-protein alanine-scanning mutagenesis of allostery: A large percentage of a protein can contribute to mechanism.

Authors:  Qingling Tang; Aron W Fenton
Journal:  Hum Mutat       Date:  2017-06-16       Impact factor: 4.878

Review 2.  What Mutagenesis Can and Cannot Reveal About Allostery.

Authors:  Gerald M Carlson; Aron W Fenton
Journal:  Biophys J       Date:  2016-05-10       Impact factor: 4.033

3.  The phosphate moiety of phosphoenolpyruvate does NOT contribute to allosteric regulation of liver pyruvate kinase by fructose-1,6-bisphosphate.

Authors:  Benjamin M Chappell; Aron W Fenton
Journal:  Arch Biochem Biophys       Date:  2020-10-16       Impact factor: 4.013

4.  H/D Exchange Characterization of Silent Coupling: Entropy-Enthalpy Compensation in Allostery.

Authors:  Charulata B Prasannan; Aleksandra Gmyrek; Tyler A Martin; Maria T Villar; Antonio Artigues; James Ching Lee; Aron W Fenton
Journal:  Biophys J       Date:  2020-05-20       Impact factor: 4.033

5.  Allosteric regulation of Lactobacillus plantarum xylulose 5-phosphate/fructose 6-phosphate phosphoketolase (Xfp).

Authors:  Katie Glenn; Kerry S Smith
Journal:  J Bacteriol       Date:  2015-01-20       Impact factor: 3.490

6.  Dual mechanism of ion permeation through VDAC revealed with inorganic phosphate ions and phosphate metabolites.

Authors:  Eva-Maria Krammer; Giang Thi Vu; Fabrice Homblé; Martine Prévost
Journal:  PLoS One       Date:  2015-04-10       Impact factor: 3.240

7.  An allostatic mechanism for M2 pyruvate kinase as an amino-acid sensor.

Authors:  Meng Yuan; Iain W McNae; Yiyuan Chen; Elizabeth A Blackburn; Martin A Wear; Paul A M Michels; Linda A Fothergill-Gilmore; Ted Hupp; Malcolm D Walkinshaw
Journal:  Biochem J       Date:  2018-05-31       Impact factor: 3.857

  7 in total

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