Literature DB >> 23256190

Dynamical modelling of haematopoiesis: an integrated view over the system in homeostasis and under perturbation.

Erica Manesso1, José Teles, David Bryder, Carsten Peterson.   

Abstract

A very high number of different types of blood cells must be generated daily through a process called haematopoiesis in order to meet the physiological requirements of the organism. All blood cells originate from a population of relatively few haematopoietic stem cells residing in the bone marrow, which give rise to specific progenitors through different lineages. Steady-state dynamics are governed by cell division and commitment rates as well as by population sizes, while feedback components guarantee the restoration of steady-state conditions. In this study, all parameters governing these processes were estimated in a computational model to describe the haematopoietic hierarchy in adult mice. The model consisted of ordinary differential equations and included negative feedback regulation. A combination of literature data, a novel divide et impera approach for steady-state calculations and stochastic optimization allowed one to reduce possible configurations of the system. The model was able to recapitulate the fundamental steady-state features of haematopoiesis and simulate the re-establishment of steady-state conditions after haemorrhage and bone marrow transplantation. This computational approach to the haematopoietic system is novel and provides insight into the dynamics and the nature of possible solutions, with potential applications in both fundamental and clinical research.

Entities:  

Mesh:

Year:  2013        PMID: 23256190      PMCID: PMC3565732          DOI: 10.1098/rsif.2012.0817

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  69 in total

1.  Global DNA demethylation during mouse erythropoiesis in vivo.

Authors:  Jeffrey R Shearstone; Ramona Pop; Christoph Bock; Patrick Boyle; Alexander Meissner; Merav Socolovsky
Journal:  Science       Date:  2011-11-11       Impact factor: 47.728

Review 2.  Origin and turnover of monocytes and macrophages.

Authors:  R van Furth
Journal:  Curr Top Pathol       Date:  1989

3.  Hematopoietic stem cells: the paradigmatic tissue-specific stem cell.

Authors:  David Bryder; Derrick J Rossi; Irving L Weissman
Journal:  Am J Pathol       Date:  2006-08       Impact factor: 4.307

Review 4.  Attributes of adult stem cells.

Authors:  M R Alison; S Islam
Journal:  J Pathol       Date:  2009-01       Impact factor: 7.996

Review 5.  Cyclical neutropenia and other periodic hematological disorders: a review of mechanisms and mathematical models.

Authors:  C Haurie; D C Dale; M C Mackey
Journal:  Blood       Date:  1998-10-15       Impact factor: 22.113

Review 6.  Hereditary anemias of the mouse: a review for geneticists.

Authors:  E S Russell
Journal:  Adv Genet       Date:  1979       Impact factor: 1.944

Review 7.  Homeostasis of naive and memory T cells.

Authors:  Charles D Surh; Jonathan Sprent
Journal:  Immunity       Date:  2008-12-19       Impact factor: 31.745

8.  A mathematical model of erythropoiesis in mice and rats. Part 1: Structure of the model.

Authors:  M Loeffler; K Pantel; H Wulff; H E Wichmann
Journal:  Cell Tissue Kinet       Date:  1989-01

9.  Compartmental architecture and dynamics of hematopoiesis.

Authors:  David Dingli; Arne Traulsen; Jorge M Pacheco
Journal:  PLoS One       Date:  2007-04-04       Impact factor: 3.240

10.  Cell lineages and the logic of proliferative control.

Authors:  Arthur D Lander; Kimberly K Gokoffski; Frederic Y M Wan; Qing Nie; Anne L Calof
Journal:  PLoS Biol       Date:  2009-01-20       Impact factor: 8.029

View more
  16 in total

Review 1.  Engineering control into medicine.

Authors:  David J Stone; Leo Anthony Celi; Marie Csete
Journal:  J Crit Care       Date:  2015-01-30       Impact factor: 3.425

Review 2.  Changing mutational and adaptive landscapes and the genesis of cancer.

Authors:  L Alexander Liggett; James DeGregori
Journal:  Biochim Biophys Acta Rev Cancer       Date:  2017-02-04       Impact factor: 10.680

3.  Comparison of mathematical frameworks for modeling erythropoiesis in the context of malaria infection.

Authors:  Luis L Fonseca; Eberhard O Voit
Journal:  Math Biosci       Date:  2015-09-08       Impact factor: 2.144

4.  Optimal experimental design for mathematical models of haematopoiesis.

Authors:  Luis Martinez Lomeli; Abdon Iniguez; Prasanthi Tata; Nilamani Jena; Zhong-Ying Liu; Richard Van Etten; Arthur D Lander; Babak Shahbaba; John S Lowengrub; Vladimir N Minin
Journal:  J R Soc Interface       Date:  2021-01-27       Impact factor: 4.118

5.  An Integrative multi-lineage model of variation in leukopoiesis and acute myelogenous leukemia.

Authors:  Joyatee M Sarker; Serena M Pearce; Robert P Nelson; Tamara L Kinzer-Ursem; David M Umulis; Ann E Rundell
Journal:  BMC Syst Biol       Date:  2017-08-25

Review 6.  Towards Quantitative Systems Pharmacology Models of Chemotherapy-Induced Neutropenia.

Authors:  M Craig
Journal:  CPT Pharmacometrics Syst Pharmacol       Date:  2017-04-18

7.  Whole-body iron transport and metabolism: Mechanistic, multi-scale model to improve treatment of anemia in chronic kidney disease.

Authors:  Joydeep Sarkar; Alka A Potdar; Gerald M Saidel
Journal:  PLoS Comput Biol       Date:  2018-04-16       Impact factor: 4.475

8.  Mathematical modeling reveals differential effects of erythropoietin on proliferation and lineage commitment of human hematopoietic progenitors in early erythroid culture.

Authors:  Daniel Ward; Deborah Carter; Martin Homer; Lucia Marucci; Alexandra Gampel
Journal:  Haematologica       Date:  2015-11-20       Impact factor: 9.941

9.  Clonal selection and therapy resistance in acute leukaemias: mathematical modelling explains different proliferation patterns at diagnosis and relapse.

Authors:  Thomas Stiehl; Natalia Baran; Anthony D Ho; Anna Marciniak-Czochra
Journal:  J R Soc Interface       Date:  2014-03-12       Impact factor: 4.118

10.  Merging concepts - coupling an agent-based model of hematopoietic stem cells with an ODE model of granulopoiesis.

Authors:  Axel Krinner; Ingo Roeder; Markus Loeffler; Markus Scholz
Journal:  BMC Syst Biol       Date:  2013-11-01
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.