Literature DB >> 23254136

Use of universal 16S rRNA gene PCR as a diagnostic tool for venous access port-related bloodstream infections.

M Guembe1, M Marín, P Martín-Rabadán, A Echenagusia, F Camúñez, G Rodríguez-Rosales, G Simó, M Echenagusia, E Bouza.   

Abstract

Amplification of the universal 16S rRNA gene using PCR has improved the diagnostic yield of microbiological samples. However, no data have been reported on the reliability of this technique with venous access ports (VAPs). We assessed the utility of 16S rRNA PCR for the prediction of VAP-related bloodstream infection (VAP-RBSI). During a 2-year period, we prospectively received all VAPs removed by interventional radiologists. PCR and conventional cultures were performed using samples from the different VAP sites. We compared the results of PCR with those of conventional culture for patients with confirmed VAP-RBSI. We collected 219 VAPs from 219 patients. Conventional VAP culture revealed 15 episodes of VAP-RBSI. PCR revealed a further 4 episodes in patients undergoing antibiotic therapy which would have gone undetected using conventional culture. Moreover, it had a negative predictive value of 97.8% for the prediction of VAP-RBSI when it was performed using biofilm from the internal surface of the port. In conclusion, universal 16S rRNA PCR performed with samples from the inside of VAPs proved to be a useful tool for the diagnosis of VAP-RBSI. It increased detection of VAP-RBSI episodes by 21.1% in patients undergoing antibiotic therapy whose episodes would have gone undetected using conventional culture. Therefore, we propose a new application of 16S rRNA PCR as a useful tool for the diagnosis of VAP-RBSI in patients receiving antibiotic therapy.

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Year:  2012        PMID: 23254136      PMCID: PMC3592034          DOI: 10.1128/JCM.02414-12

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  19 in total

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Journal:  Clin Infect Dis       Date:  1999-11       Impact factor: 9.079

2.  Venous access port--related bacteremia in patients with acquired immunodeficiency syndrome or cancer: the reservoir as a diagnostic and therapeutic tool.

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Journal:  Clin Infect Dis       Date:  2001-05-21       Impact factor: 9.079

Review 3.  Review and re-analysis of domain-specific 16S primers.

Authors:  G C Baker; J J Smith; D A Cowan
Journal:  J Microbiol Methods       Date:  2003-12       Impact factor: 2.363

4.  Use of quantitative 16S ribosomal DNA detection for diagnosis of central vascular catheter-associated bacterial infection.

Authors:  S Warwick; M Wilks; E Hennessy; J Powell-Tuck; M Small; J Sharp; M R Millar
Journal:  J Clin Microbiol       Date:  2004-04       Impact factor: 5.948

5.  Three-year experience with sonicated vascular catheter cultures in a clinical microbiology laboratory.

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6.  Systematic use of universal 16S rRNA gene polymerase chain reaction (PCR) and sequencing for processing pleural effusions improves conventional culture techniques.

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Journal:  Medicine (Baltimore)       Date:  2012-03       Impact factor: 1.889

7.  Molecular diagnosis of bacterial endocarditis by broad-range PCR amplification and direct sequencing.

Authors:  D Goldenberger; A Künzli; P Vogt; R Zbinden; M Altwegg
Journal:  J Clin Microbiol       Date:  1997-11       Impact factor: 5.948

8.  Detection of bacteraemia in patients with fever and neutropenia using 16S rRNA gene amplification by polymerase chain reaction.

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Journal:  Eur J Clin Microbiol Infect Dis       Date:  1998-04       Impact factor: 3.267

9.  Systematic 16S rRNA gene sequencing of atypical clinical isolates identified 27 new bacterial species associated with humans.

Authors:  M Drancourt; P Berger; D Raoult
Journal:  J Clin Microbiol       Date:  2004-05       Impact factor: 5.948

10.  Comparison of diagnostic specimens and methods to evaluate infected venous access ports.

Authors:  E D Whitman; A M Boatman
Journal:  Am J Surg       Date:  1995-12       Impact factor: 2.565

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  9 in total

1.  Value of superficial cultures for prediction of catheter-related bloodstream infection in long-term catheters: a prospective study.

Authors:  M Guembe; P Martín-Rabadán; A Echenagusia; F Camúñez; G Rodríguez-Rosales; G Simó; M Echenagusia; E Bouza
Journal:  J Clin Microbiol       Date:  2013-07-12       Impact factor: 5.948

2.  Rapid Identification of Biofilms Using a Robust Multichannel Polymer Sensor Array.

Authors:  Sawinee Ngernpimai; Yingying Geng; Jessa Marie Makabenta; Ryan F Landis; Puspam Keshri; Akash Gupta; Cheng-Hsuan Li; Apiwat Chompoosor; Vincent M Rotello
Journal:  ACS Appl Mater Interfaces       Date:  2019-03-14       Impact factor: 9.229

3.  The Natural History and Composition of Urinary Catheter Biofilms: Early Uropathogen Colonization with Intraluminal and Distal Predominance.

Authors:  Glenn T Werneburg; Anh Nguyen; Nadine S Henderson; Raymond R Rackley; Daniel A Shoskes; Amanda L Le Sueur; Anthony T Corcoran; Aaron E Katz; Jason Kim; Annie J Rohan; David G Thanassi
Journal:  J Urol       Date:  2019-08-20       Impact factor: 7.450

Review 4.  Biofilms in periprosthetic orthopedic infections.

Authors:  Stephen J McConoughey; Rob Howlin; Jeff F Granger; Maurice M Manring; Jason H Calhoun; Mark Shirtliff; Sandeep Kathju; Paul Stoodley
Journal:  Future Microbiol       Date:  2014       Impact factor: 3.165

Review 5.  16S Ribosomal Ribonucleic Acid Gene Polymerase Chain Reaction in the Diagnosis of Bloodstream Infections: A Systematic Review and Meta-Analysis.

Authors:  Guoming Su; Zhuqing Fu; Liren Hu; Yueying Wang; Zuguo Zhao; Weiqing Yang
Journal:  PLoS One       Date:  2015-05-21       Impact factor: 3.240

Review 6.  Strategies for combating bacterial biofilm infections.

Authors:  Hong Wu; Claus Moser; Heng-Zhuang Wang; Niels Høiby; Zhi-Jun Song
Journal:  Int J Oral Sci       Date:  2015-03-23       Impact factor: 6.344

7.  Development of a heptaplex PCR assay for identification of Staphylococcus aureus and CoNS with simultaneous detection of virulence and antibiotic resistance genes.

Authors:  Charles Emeka Okolie; Karl G Wooldridge; David P J Turner; Alan Cockayne; Richard James
Journal:  BMC Microbiol       Date:  2015-08-05       Impact factor: 3.605

8.  Molecular analysis of endotracheal tube biofilms and tracheal aspirates in the pediatric intensive care unit.

Authors:  Matthew K Leroue; J Kirk Harris; Katherine M Burgess; Mark J Stevens; Joshua I Miller; Marci K Sontag; Yamila L Sierra; Brandie D Wagner; Peter M Mourani
Journal:  Adv Pediatr Res       Date:  2017-11-10

9.  Tetrasodium EDTA Is Effective at Eradicating Biofilms Formed by Clinically Relevant Microorganisms from Patients' Central Venous Catheters.

Authors:  Fangning Liu; Satyender Hansra; Gordon Crockford; Wolfgang Köster; Brenda J Allan; Joseph M Blondeau; Chantal Lainesse; Aaron P White
Journal:  mSphere       Date:  2018-11-28       Impact factor: 4.389

  9 in total

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