Literature DB >> 25878039

How bacterial cells keep ribonucleases under control.

Murray P Deutscher1.   

Abstract

Ribonucleases (RNases) play an essential role in essentially every aspect of RNA metabolism, but they also can be destructive enzymes that need to be regulated to avoid unwanted degradation of RNA molecules. As a consequence, cells have evolved multiple strategies to protect RNAs against RNase action. They also utilize a variety of mechanisms to regulate the RNases themselves. These include post-transcriptional regulation, post-translational modification, trans-acting inhibitors, cellular localization, as well as others that are less well studied. In this review, I will briefly discuss how RNA molecules are protected and then examine in detail our current understanding of the mechanisms known to regulate individual RNases. © FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Keywords:  RNA protection; cellular localization; endoribonuclease; exoribonuclease; post-translational modification

Mesh:

Substances:

Year:  2015        PMID: 25878039      PMCID: PMC4542689          DOI: 10.1093/femsre/fuv012

Source DB:  PubMed          Journal:  FEMS Microbiol Rev        ISSN: 0168-6445            Impact factor:   16.408


  95 in total

1.  Cold shock induction of RNase R and its role in the maturation of the quality control mediator SsrA/tmRNA.

Authors:  Fátima Cairrão; Ana Cruz; Hiroyuki Mori; Cecília Maria Arraiano
Journal:  Mol Microbiol       Date:  2003-11       Impact factor: 3.501

2.  An important role for RNase R in mRNA decay.

Authors:  Zhuan-Fen Cheng; Murray P Deutscher
Journal:  Mol Cell       Date:  2005-01-21       Impact factor: 17.970

Review 3.  Ribonucleases in bacterial toxin-antitoxin systems.

Authors:  Gregory M Cook; Jennifer R Robson; Rebekah A Frampton; Joanna McKenzie; Rita Przybilski; Peter C Fineran; Vickery L Arcus
Journal:  Biochim Biophys Acta       Date:  2013-02-21

4.  Exoribonuclease and endoribonuclease activities of RNase BN/RNase Z both function in vivo.

Authors:  Tanmay Dutta; Arun Malhotra; Murray P Deutscher
Journal:  J Biol Chem       Date:  2012-08-14       Impact factor: 5.157

Review 5.  The critical role of RNA processing and degradation in the control of gene expression.

Authors:  Cecília M Arraiano; José M Andrade; Susana Domingues; Inês B Guinote; Michal Malecki; Rute G Matos; Ricardo N Moreira; Vânia Pobre; Filipa P Reis; Margarida Saramago; Inês J Silva; Sandra C Viegas
Journal:  FEMS Microbiol Rev       Date:  2010-06-24       Impact factor: 16.408

6.  The KH and S1 domains of Escherichia coli polynucleotide phosphorylase are necessary for autoregulation and growth at low temperature.

Authors:  Maura Epifanía Matus-Ortega; Maria Elena Regonesi; Alberto Piña-Escobedo; Paolo Tortora; Gianni Dehò; Jaime García-Mena
Journal:  Biochim Biophys Acta       Date:  2007-02-04

7.  Enzymatic basis for hydrolytic versus phosphorolytic mRNA degradation in Escherichia coli and Bacillus subtilis.

Authors:  M P Deutscher; N B Reuven
Journal:  Proc Natl Acad Sci U S A       Date:  1991-04-15       Impact factor: 11.205

8.  YmdB: a stress-responsive ribonuclease-binding regulator of E. coli RNase III activity.

Authors:  Kwang-sun Kim; Robert Manasherob; Stanley N Cohen
Journal:  Genes Dev       Date:  2008-12-15       Impact factor: 11.361

9.  Regulation of ribonuclease E activity by the L4 ribosomal protein of Escherichia coli.

Authors:  Dharam Singh; Ssu-Jean Chang; Pei-Hsun Lin; Olga V Averina; Vladimir R Kaberdin; Sue Lin-Chao
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-14       Impact factor: 11.205

Review 10.  Cellular organization of the transfer of genetic information.

Authors:  Manuel Campos; Christine Jacobs-Wagner
Journal:  Curr Opin Microbiol       Date:  2013-02-07       Impact factor: 7.934

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  18 in total

Review 1.  Trans-acting regulators of ribonuclease activity.

Authors:  Jaejin Lee; Minho Lee; Kangseok Lee
Journal:  J Microbiol       Date:  2021-02-10       Impact factor: 3.422

2.  Growth Phase-dependent Variation of RNase BN/Z Affects Small RNAs: REGULATION OF 6S RNA.

Authors:  Hua Chen; Tanmay Dutta; Murray P Deutscher
Journal:  J Biol Chem       Date:  2016-11-08       Impact factor: 5.157

3.  A novel mechanism of ribonuclease regulation: GcvB and Hfq stabilize the mRNA that encodes RNase BN/Z during exponential phase.

Authors:  Hua Chen; Angelica Previero; Murray P Deutscher
Journal:  J Biol Chem       Date:  2019-11-19       Impact factor: 5.157

4.  Translation-dependent unwinding of stem-loops by UPF1 licenses Regnase-1 to degrade inflammatory mRNAs.

Authors:  Takashi Mino; Noriki Iwai; Masayuki Endo; Kentaro Inoue; Kotaro Akaki; Fabian Hia; Takuya Uehata; Tomoko Emura; Kumi Hidaka; Yutaka Suzuki; Daron M Standley; Mariko Okada-Hatakeyama; Shigeo Ohno; Hiroshi Sugiyama; Akio Yamashita; Osamu Takeuchi
Journal:  Nucleic Acids Res       Date:  2019-09-19       Impact factor: 16.971

5.  The Endoribonuclease RNase E Coordinates Expression of mRNAs and Small Regulatory RNAs and Is Critical for the Virulence of Brucella abortus.

Authors:  Lauren M Sheehan; James A Budnick; Jaquille Fyffe-Blair; Kellie A King; Robert E Settlage; Clayton C Caswell
Journal:  J Bacteriol       Date:  2020-09-23       Impact factor: 3.490

6.  Identification of host factors limiting the overexpression of recombinant Cu, Zn superoxide dismutase in Escherichia coli.

Authors:  Shweta Guleria; Robin Joshi; Dharam Singh; Sanjay Kumar
Journal:  Biotechnol Lett       Date:  2020-07-10       Impact factor: 2.461

7.  The SmAP1/2 proteins of the crenarchaeon Sulfolobus solfataricus interact with the exosome and stimulate A-rich tailing of transcripts.

Authors:  Birgit Märtens; Linlin Hou; Fabian Amman; Michael T Wolfinger; Elena Evguenieva-Hackenberg; Udo Bläsi
Journal:  Nucleic Acids Res       Date:  2017-07-27       Impact factor: 16.971

8.  RNase II regulates RNase PH and is essential for cell survival during starvation and stationary phase.

Authors:  Shaheen Sulthana; Ernesto Quesada; Murray P Deutscher
Journal:  RNA       Date:  2017-06-16       Impact factor: 4.942

9.  Inhibition of homologous phosphorolytic ribonucleases by citrate may represent an evolutionarily conserved communicative link between RNA degradation and central metabolism.

Authors:  Carlanne M Stone; Louise E Butt; Joshua C Bufton; Daniel C Lourenco; Darren M Gowers; Andrew R Pickford; Paul A Cox; Helen A Vincent; Anastasia J Callaghan
Journal:  Nucleic Acids Res       Date:  2017-05-05       Impact factor: 16.971

10.  Reversible acetylation on Lys501 regulates the activity of RNase II.

Authors:  Limin Song; Guangyuan Wang; Arun Malhotra; Murray P Deutscher; Wenxing Liang
Journal:  Nucleic Acids Res       Date:  2016-02-04       Impact factor: 16.971

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