Literature DB >> 23239268

Translational diffusion coefficients of macromolecules.

R Rodríguez Schmidt1, J G Hernández Cifre, J García de la Torre.   

Abstract

The calculation of the translational diffusion coefficient of a single flexible polymer chain in dilute solution can be basically addressed either a) within the Einstein theory (calculating the time autocorrelation function of the macromolecule center of mass), or b) within the Kirkwood and Riseman theory for irreversible processes of macromolecules in solution. The equations of the latter theory can be solved employing different approximations that give rise to different values of the diffusion coefficient. In general, the value of the diffusion coefficient obtained through the different theories and approaches varies slightly depending on polymer features like flexibility. In this paper, we evaluate the most common procedures to compute the diffusion coefficient of flexible macromolecules via computer simulation and the difference between the values obtained.

Entities:  

Year:  2012        PMID: 23239268     DOI: 10.1140/epje/i2012-12130-x

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  3 in total

1.  Simulation of the conformation and dynamics of a double-helical model for DNA.

Authors:  M L Huertas; S Navarro; M C Lopez Martinez; J García de la Torre
Journal:  Biophys J       Date:  1997-12       Impact factor: 4.033

2.  HYDRO: a computer program for the prediction of hydrodynamic properties of macromolecules.

Authors:  J Garcia de la Torre; S Navarro; M C Lopez Martinez; F G Diaz; J J Lopez Cascales
Journal:  Biophys J       Date:  1994-08       Impact factor: 4.033

Review 3.  Hydrodynamic properties of complex, rigid, biological macromolecules: theory and applications.

Authors:  J G Garcia de la Torre; V A Bloomfield
Journal:  Q Rev Biophys       Date:  1981-02       Impact factor: 5.318

  3 in total
  2 in total

1.  Modeling the relaxation time of DNA confined in a nanochannel.

Authors:  Douglas R Tree; Yanwei Wang; Kevin D Dorfman
Journal:  Biomicrofluidics       Date:  2013-10-22       Impact factor: 2.800

2.  Evaluation of the Kirkwood approximation for the diffusivity of channel-confined DNA chains in the de Gennes regime.

Authors:  Aashish Jain; Kevin D Dorfman
Journal:  Biomicrofluidics       Date:  2015-04-07       Impact factor: 2.800

  2 in total

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