Literature DB >> 7948671

HYDRO: a computer program for the prediction of hydrodynamic properties of macromolecules.

J Garcia de la Torre1, S Navarro, M C Lopez Martinez, F G Diaz, J J Lopez Cascales.   

Abstract

HYDRO is a program for the calculation of sedimentation and diffusion coefficients, rotational relaxation times, and intrinsic viscosities of rigid macromolecules of arbitrary shape that are represented by bead models. Actually, HYDRO contains various FORTRAN callable subroutines that can be linked to the user's own programs to account for variability of shape or flexibility. Some hints are given for the use of HYDRO in various situations.

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Year:  1994        PMID： 7948671      PMCID： PMC1225396          DOI： 10.1016/S0006-3495(94)80512-0

Source DB:  PubMed          Journal:  Biophys J        ISSN： 0006-3495            Impact factor:   4.033


  3 in total

1.  Frictional coefficients of multisubunit structures. I. Theory.

Authors:  V Bloomfield; W O Dalton; K E Van Holde
Journal:  Biopolymers       Date:  1967-02       Impact factor: 2.505

2.  Dynamics of fluorescence polarization in macromolecules.

Authors:  G G Belford; R L Belford; G Weber
Journal:  Proc Natl Acad Sci U S A       Date:  1972-06       Impact factor: 11.205

Review 3.  Hydrodynamic properties of complex, rigid, biological macromolecules: theory and applications.

Authors:  J G Garcia de la Torre; V A Bloomfield
Journal:  Q Rev Biophys       Date:  1981-02       Impact factor: 5.318
  3 in total
  73 in total

1.  The conformation of serum albumin in solution: a combined phosphorescence depolarization-hydrodynamic modeling study.

Authors:  M L Ferrer; R Duchowicz; B Carrasco; J G de la Torre; A U Acuña
Journal:  Biophys J       Date:  2001-05       Impact factor: 4.033

2.  Calculation of hydrodynamic properties of globular proteins from their atomic-level structure.

Authors:  J García De La Torre; M L Huertas; B Carrasco
Journal:  Biophys J       Date:  2000-02       Impact factor: 4.033

3.  The structure and dynamics in solution of Cu(I) pseudoazurin from Paracoccus pantotrophus.

Authors:  G S Thompson; Y C Leung; S J Ferguson; S E Radford; C Redfield
Journal:  Protein Sci       Date:  2000-05       Impact factor: 6.725

4.  Calculation of hydrodynamic properties of small nucleic acids from their atomic structure.

Authors:  M X Fernandes; A Ortega; M C López Martínez; J García de la Torre
Journal:  Nucleic Acids Res       Date:  2002-04-15       Impact factor: 16.971

5.  Hydrodynamic properties of rigid particles: comparison of different modeling and computational procedures.

Authors:  B Carrasco; J García de la Torre
Journal:  Biophys J       Date:  1999-06       Impact factor: 4.033

6.  Modeling the hydration of proteins: prediction of structural and hydrodynamic parameters from X-ray diffraction and scattering data.

Authors:  Helmut Durchschlag; Peter Zipper
Journal:  Eur Biophys J       Date:  2003-04-25       Impact factor: 1.733

7.  Two distinct myosin light chain structures are induced by specific variations within the bound IQ motifs-functional implications.

Authors:  Mohammed Terrak; Guanming Wu; Walter F Stafford; Renne C Lu; Roberto Dominguez
Journal:  EMBO J       Date:  2003-02-03       Impact factor: 11.598

8.  Brownian dynamics simulation of rigid particles of arbitrary shape in external fields.

Authors:  Miguel X Fernandes; José García de la Torre
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

9.  Phase Separation of Toxic Dipeptide Repeat Proteins Related to C9orf72 ALS/FTD.

Authors:  Hamidreza Jafarinia; Erik van der Giessen; Patrick R Onck
Journal:  Biophys J       Date:  2020-07-16       Impact factor: 4.033

10.  Conformation of full-length Bruton tyrosine kinase (Btk) from synchrotron X-ray solution scattering.

Authors:  José A Márquez; C I Edvard Smith; Maxim V Petoukhov; Paola Lo Surdo; Pekka T Mattsson; Marika Knekt; Anna Westlund; Klaus Scheffzek; Matti Saraste; Dmitri I Svergun
Journal:  EMBO J       Date:  2003-09-15       Impact factor: 11.598
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