Literature DB >> 23229230

Conformational analysis of lignin models: a chemometric approach.

Eduardo W Castilho-Almeida1, Wagner B De Almeida, Hélio F Dos Santos.   

Abstract

In the present work, conformational analysis of lignin models was accomplished by considering four cross-link types (3-5', β-5', α-O-4 and β-O-4) and three monomer units [guaiacyl (G), p-hydroxyphenyl (H) and syringyl (S)]. Analysis involving the 3-5' and β-5' dimers was conducted following the standard procedure, i.e., rotating the monomers around the single bond. On the other hand, analysis of α-O-4 and β-O-4 dimers followed a distinct protocol with the aid of an interesting chemometric tool called Box-Behnken (BB) design. This methodology was applied with the aim of screening the most relevant dihedral angles. The results show that the conformational space for large systems with several dihedral angles can be mapped satisfactorily through the BB approach, reducing the number of dimensions to be treated at the quantum mechanical level. Furthermore, the quantum mechanics-chemometry-quantum mechanics (QM/BB/QM) method proposed here allows us to determine calculated torsional angles for lignin models in good agreement with crystallographic data for some model compounds.

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Year:  2012        PMID: 23229230     DOI: 10.1007/s00894-012-1689-4

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  15 in total

1.  Torsional Barriers and Equilibrium Angle of Biphenyl: Reconciling Theory with Experiment.

Authors:  Mikael P Johansson; Jeppe Olsen
Journal:  J Chem Theory Comput       Date:  2008-09-09       Impact factor: 6.006

2.  Measurement of interaction forces between lignin and cellulose as a function of aqueous electrolyte solution conditions.

Authors:  Shannon M Notley; Magnus Norgren
Journal:  Langmuir       Date:  2006-12-19       Impact factor: 3.882

3.  Box-Behnken design: an alternative for the optimization of analytical methods.

Authors:  S L C Ferreira; R E Bruns; H S Ferreira; G D Matos; J M David; G C Brandão; E G P da Silva; L A Portugal; P S dos Reis; A S Souza; W N L dos Santos
Journal:  Anal Chim Acta       Date:  2007-07-23       Impact factor: 6.558

4.  A molecular mechanics force field for lignin.

Authors:  Loukas Petridis; Jeremy C Smith
Journal:  J Comput Chem       Date:  2009-02       Impact factor: 3.376

5.  Studies on the effect of ball milling on lignin structure using a modified DFRC method.

Authors:  Tsutomu Ikeda; Kevin Holtman; John F Kadla; Hou-min Chang; Hasan Jameel
Journal:  J Agric Food Chem       Date:  2002-01-02       Impact factor: 5.279

6.  Simulation analysis of the temperature dependence of lignin structure and dynamics.

Authors:  Loukas Petridis; Roland Schulz; Jeremy C Smith
Journal:  J Am Chem Soc       Date:  2011-11-28       Impact factor: 15.419

7.  Theoretical and Raman spectroscopic studies of phenolic lignin model monomers.

Authors:  Kiki L Larsen; Søren Barsberg
Journal:  J Phys Chem B       Date:  2010-06-17       Impact factor: 2.991

8.  Conformational study of a guaiacyl beta-O-4 lignin model compound by NMR. Examination of intramolecular hydrogen bonding interactions and conformational flexibility in solution.

Authors:  Stéphane Besombes; Jean-Pierre Utille; Karim Mazeau; Danielle Robert; François R Taravel
Journal:  Magn Reson Chem       Date:  2004-03       Impact factor: 2.447

Review 9.  Lignin biosynthesis.

Authors:  Wout Boerjan; John Ralph; Marie Baucher
Journal:  Annu Rev Plant Biol       Date:  2003       Impact factor: 26.379

10.  Molecular dynamics simulations of a guaiacyl beta-O-4 lignin model compound: examination of intramolecular hydrogen bonding and conformational flexibility.

Authors:  Stéphane Besombes; Karim Mazeau
Journal:  Biopolymers       Date:  2004-02-15       Impact factor: 2.505

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  1 in total

1.  Collagen Cross-Linking Lignin Improves the Bonding Performance of Etch-and-Rinse Adhesives to Dentin.

Authors:  Diego Martins de Paula; Diego Lomonaco; Antônio Moisés Parente da Ponte; Karen Evellin Cordeiro; Madiana Magalhães Moreira; Massimo Giovarruscio; Salvatore Sauro; Victor Pinheiro Feitosa
Journal:  Materials (Basel)       Date:  2022-04-29       Impact factor: 3.748

  1 in total

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