Literature DB >> 23224681

MATLAB implementation of a dynamic clamp with bandwidth of >125 kHz capable of generating I Na at 37 °C.

Chris Clausen1, Virginijus Valiunas, Peter R Brink, Ira S Cohen.   

Abstract

We describe the construction of a dynamic clamp with a bandwidth of >125 kHz that utilizes a high-performance, yet low-cost, standard home/office PC interfaced with a high-speed (16 bit) data acquisition module. High bandwidth is achieved by exploiting recently available software advances (code-generation technology and optimized real-time kernel). Dynamic-clamp programs are constructed using Simulink, a visual programming language. Blocks for computation of membrane currents are written in the high-level MATLAB language; no programming in C is required. The instrument can be used in single- or dual-cell configurations, with the capability to modify programs while experiments are in progress. We describe an algorithm for computing the fast transient Na(+) current (I Na) in real time and test its accuracy and stability using rate constants appropriate for 37 °C. We then construct a program capable of supplying three currents to a cell preparation: I Na, the hyperpolarizing-activated inward pacemaker current (I f) and an inward-rectifier K(+) current (I K1). The program corrects for the IR drop due to electrode current flow and also records all voltages and currents. We tested this program on dual patch-clamped HEK293 cells where the dynamic clamp controls a current-clamp amplifier and a voltage-clamp amplifier controls membrane potential, and current-clamped HEK293 cells where the dynamic clamp produces spontaneous pacing behavior exhibiting Na(+) spikes in otherwise passive cells.

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Year:  2012        PMID: 23224681      PMCID: PMC3626758          DOI: 10.1007/s00424-012-1186-8

Source DB:  PubMed          Journal:  Pflugers Arch        ISSN: 0031-6768            Impact factor:   3.657


  27 in total

Review 1.  Molecular diversity of pacemaker ion channels.

Authors:  U B Kaupp; R Seifert
Journal:  Annu Rev Physiol       Date:  2001       Impact factor: 19.318

2.  Real-Time linux dynamic clamp: a fast and flexible way to construct virtual ion channels in living cells.

Authors:  A D Dorval; D J Christini; J A White
Journal:  Ann Biomed Eng       Date:  2001-10       Impact factor: 3.934

3.  Implementation of a fast 16-Bit dynamic clamp using LabVIEW-RT.

Authors:  Paul H M Kullmann; Diek W Wheeler; Joshua Beacom; John P Horn
Journal:  J Neurophysiol       Date:  2003-09-24       Impact factor: 2.714

Review 4.  The dynamic clamp comes of age.

Authors:  Astrid A Prinz; L F Abbott; Eve Marder
Journal:  Trends Neurosci       Date:  2004-04       Impact factor: 13.837

5.  Suppression of phosphoinositide 3-kinase signaling and alteration of multiple ion currents in drug-induced long QT syndrome.

Authors:  Zhongju Lu; Chia-Yen C Wu; Ya-Ping Jiang; Lisa M Ballou; Chris Clausen; Ira S Cohen; Richard Z Lin
Journal:  Sci Transl Med       Date:  2012-04-25       Impact factor: 17.956

6.  Injection of digitally synthesized synaptic conductance transients to measure the integrative properties of neurons.

Authors:  H P Robinson; N Kawai
Journal:  J Neurosci Methods       Date:  1993-09       Impact factor: 2.390

7.  Potassium currents in rat prevertebral and paravertebral sympathetic neurones: control of firing properties.

Authors:  H S Wang; D McKinnon
Journal:  J Physiol       Date:  1995-06-01       Impact factor: 5.182

8.  Modeling of Ca2+ flux in pancreatic beta-cells: role of the plasma membrane and intracellular stores.

Authors:  Leonid E Fridlyand; Natalia Tamarina; Louis H Philipson
Journal:  Am J Physiol Endocrinol Metab       Date:  2003-03-18       Impact factor: 4.310

9.  Dynamic clamp: computer-generated conductances in real neurons.

Authors:  A A Sharp; M B O'Neil; L F Abbott; E Marder
Journal:  J Neurophysiol       Date:  1993-03       Impact factor: 2.714

10.  A dynamic model of the cardiac ventricular action potential. I. Simulations of ionic currents and concentration changes.

Authors:  C H Luo; Y Rudy
Journal:  Circ Res       Date:  1994-06       Impact factor: 17.367

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  2 in total

1.  Nonlinear effects of hyperpolarizing shifts in activation of mutant Nav1.7 channels on resting membrane potential.

Authors:  Mark Estacion; Stephen G Waxman
Journal:  J Neurophysiol       Date:  2017-02-01       Impact factor: 2.714

2.  A Dynamic Clamp on Every Rig.

Authors:  Niraj S Desai; Richard Gray; Daniel Johnston
Journal:  eNeuro       Date:  2017-10-23
  2 in total

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