Literature DB >> 23221814

Quality metrics for high order meshes: analysis of the mechanical simulation of the heart beat.

Pablo Lamata1, Ishani Roy, Bojan Blazevic, Andrew Crozier, Sander Land, Steven A Niederer, D Rod Hose, Nicolas P Smith.   

Abstract

The quality of a computational mesh is an important characteristic for stable and accurate simulations. Quality depends on the regularity of the initial mesh, and in mechanical simulations it evolves in time, with deformations causing changes in volume and distortion of mesh elements. Mesh quality metrics are therefore relevant for both mesh personalization and the monitoring of the simulation process. This work evaluates the significance, in meshes with high order interpolation, of four quality metrics described in the literature, applying them to analyse the stability of the simulation of the heart beat. It also investigates how image registration and mesh warping parameters affect the quality and stability of meshes. Jacobian-based metrics outperformed or matched the results of coarse geometrical metrics of aspect ratio or orthogonality, although they are more expensive computationally. The stability of simulations of a complete heart cycle was best predicted with a specificity of 61%, sensitivity of 85%, and only nominal differences were found changing the intra-element and per-element combination of quality values. A compromise between fitting accuracy and mesh stability and quality was found. Generic geometrical quality metrics have a limited success predicting stability, and an analysis of the simulation problem may be required for an optimal definition of quality.

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Year:  2012        PMID: 23221814     DOI: 10.1109/TMI.2012.2231094

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  8 in total

Review 1.  Using physiologically based models for clinical translation: predictive modelling, data interpretation or something in-between?

Authors:  Steven A Niederer; Nic P Smith
Journal:  J Physiol       Date:  2016-07-03       Impact factor: 5.182

2.  Improving the stability of cardiac mechanical simulations.

Authors:  Sander Land; Steven A Niederer; Pablo Lamata; Nicolas P Smith
Journal:  IEEE Trans Biomed Eng       Date:  2014-12-02       Impact factor: 4.538

3.  An automatic service for the personalization of ventricular cardiac meshes.

Authors:  Pablo Lamata; Matthew Sinclair; Eric Kerfoot; Angela Lee; Andrew Crozier; Bojan Blazevic; Sander Land; Adam J Lewandowski; David Barber; Steve Niederer; Nic Smith
Journal:  J R Soc Interface       Date:  2013-12-11       Impact factor: 4.118

Review 4.  Images as drivers of progress in cardiac computational modelling.

Authors:  Pablo Lamata; Ramón Casero; Valentina Carapella; Steve A Niederer; Martin J Bishop; Jürgen E Schneider; Peter Kohl; Vicente Grau
Journal:  Prog Biophys Mol Biol       Date:  2014-08-10       Impact factor: 3.667

5.  Image-Based Personalization of Cardiac Anatomy for Coupled Electromechanical Modeling.

Authors:  A Crozier; C M Augustin; A Neic; A J Prassl; M Holler; T E Fastl; A Hennemuth; K Bredies; T Kuehne; M J Bishop; S A Niederer; G Plank
Journal:  Ann Biomed Eng       Date:  2015-09-30       Impact factor: 3.934

6.  A publicly available virtual cohort of four-chamber heart meshes for cardiac electro-mechanics simulations.

Authors:  Marina Strocchi; Christoph M Augustin; Matthias A F Gsell; Elias Karabelas; Aurel Neic; Karli Gillette; Orod Razeghi; Anton J Prassl; Edward J Vigmond; Jonathan M Behar; Justin Gould; Baldeep Sidhu; Christopher A Rinaldi; Martin J Bishop; Gernot Plank; Steven A Niederer
Journal:  PLoS One       Date:  2020-06-26       Impact factor: 3.240

7.  Anatomically accurate high resolution modeling of human whole heart electromechanics: A strongly scalable algebraic multigrid solver method for nonlinear deformation.

Authors:  Christoph M Augustin; Aurel Neic; Manfred Liebmann; Anton J Prassl; Steven A Niederer; Gundolf Haase; Gernot Plank
Journal:  J Comput Phys       Date:  2016-01-15       Impact factor: 3.553

8.  Detailed Anatomical and Electrophysiological Models of Human Atria and Torso for the Simulation of Atrial Activation.

Authors:  Ana Ferrer; Rafael Sebastián; Damián Sánchez-Quintana; José F Rodríguez; Eduardo J Godoy; Laura Martínez; Javier Saiz
Journal:  PLoS One       Date:  2015-11-02       Impact factor: 3.240

  8 in total

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