Literature DB >> 25474804

Improving the stability of cardiac mechanical simulations.

Sander Land1, Steven A Niederer2, Pablo Lamata2, Nicolas P Smith3.   

Abstract

In the field of cardiac modeling, the mechanical action of the heart is often simulated using finite element methods. These simulations are becoming increasingly challenging as the computational domain is customized to a patient's anatomy, within which large heterogeneous tension gradients are generated via biophysical cell models which drive simulations of the cardiac pump cycle. The convergence of nonlinear solvers in simulations of large deformation mechanics depends on many factors. When extreme stress or irregular deformations are modeled, commonly used numerical methods can often fail to find a solution, which can prevent investigation of interesting parameter variations or use of models in a clinical context with high standards for robustness. This paper outlines a novel numerical method that is straightforward to implement and which significantly improves the stability of these simulations. The method involves adding a compressibility penalty to the standard incompressible formulation of large deformation mechanics. We compare the method's performance when used with both a direct discretization of the equations for incompressible solid mechanics, as well as the formulation based on an isochoric/deviatoric split of the deformation gradient. The addition of this penalty decreases the tendency for solutions to deviate from the incompressibility constraint, and significantly improves the ability of the Newton solver to find a solution. Additionally, our method maintains the expected order of convergence under mesh refinement, has nearly identical solutions for the pressure-volume relations, and stabilizes the solver to allow challenging simulations of both diastolic and systolic function on personalized patient geometries.

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Year:  2014        PMID: 25474804      PMCID: PMC6198930          DOI: 10.1109/TBME.2014.2373399

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  28 in total

1.  Electromechanical model of excitable tissue to study reentrant cardiac arrhythmias.

Authors:  Martyn P Nash; Alexander V Panfilov
Journal:  Prog Biophys Mol Biol       Date:  2004 Jun-Jul       Impact factor: 3.667

2.  Transmural cardiac strains in the lateral wall of the ovine left ventricle.

Authors:  Allen Cheng; Frank Langer; Filiberto Rodriguez; John C Criscione; George T Daughters; D Craig Miller; Neil B Ingels
Journal:  Am J Physiol Heart Circ Physiol       Date:  2004-12-09       Impact factor: 4.733

3.  Myocardial material parameter estimation-a comparative study for simple shear.

Authors:  H Schmid; M P Nash; A A Young; P J Hunter
Journal:  J Biomech Eng       Date:  2006-10       Impact factor: 2.097

4.  Efficient computational methods for strongly coupled cardiac electromechanics.

Authors:  Sander Land; Steven A Niederer; Nicolas P Smith
Journal:  IEEE Trans Biomed Eng       Date:  2011-02-07       Impact factor: 4.538

5.  Laminar structure of the heart: a mathematical model.

Authors:  I J Legrice; P J Hunter; B H Smaill
Journal:  Am J Physiol       Date:  1997-05

6.  An analysis of deformation-dependent electromechanical coupling in the mouse heart.

Authors:  Sander Land; Steven A Niederer; Jan Magnus Aronsen; Emil K S Espe; Lili Zhang; William E Louch; Ivar Sjaastad; Ole M Sejersted; Nicolas P Smith
Journal:  J Physiol       Date:  2012-05-21       Impact factor: 5.182

7.  Passive material properties of intact ventricular myocardium determined from a cylindrical model.

Authors:  J M Guccione; A D McCulloch; L K Waldman
Journal:  J Biomech Eng       Date:  1991-02       Impact factor: 2.097

8.  Patient-Specific Models of Cardiac Biomechanics.

Authors:  Adarsh Krishnamurthy; Christopher T Villongco; Joyce Chuang; Lawrence R Frank; Vishal Nigam; Ernest Belezzuoli; Paul Stark; David E Krummen; Sanjiv Narayan; Jeffrey H Omens; Andrew D McCulloch; Roy Cp Kerckhoffs
Journal:  J Comput Phys       Date:  2013-07-01       Impact factor: 3.553

9.  Analyses of the redistribution of work following cardiac resynchronisation therapy in a patient specific model.

Authors:  Steven Alexander Niederer; Pablo Lamata; Gernot Plank; Phani Chinchapatnam; Matt Ginks; Kawal Rhode; Christopher Aldo Rinaldi; Reza Razavi; Nicolas Peter Smith
Journal:  PLoS One       Date:  2012-08-28       Impact factor: 3.240

10.  The estimation of patient-specific cardiac diastolic functions from clinical measurements.

Authors:  Jiahe Xi; Pablo Lamata; Steven Niederer; Sander Land; Wenzhe Shi; Xiahai Zhuang; Sebastien Ourselin; Simon G Duckett; Anoop K Shetty; C Aldo Rinaldi; Daniel Rueckert; Reza Razavi; Nic P Smith
Journal:  Med Image Anal       Date:  2012-10-16       Impact factor: 8.545

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  7 in total

Review 1.  Using physiologically based models for clinical translation: predictive modelling, data interpretation or something in-between?

Authors:  Steven A Niederer; Nic P Smith
Journal:  J Physiol       Date:  2016-07-03       Impact factor: 5.182

2.  Decreasing Compensatory Ability of Concentric Ventricular Hypertrophy in Aortic-Banded Rat Hearts.

Authors:  Alexandre Lewalle; Sander Land; Eric Carruth; Lawrence R Frank; Pablo Lamata; Jeffrey H Omens; Andrew D McCulloch; Steven A Niederer; Nicolas P Smith
Journal:  Front Physiol       Date:  2018-02-23       Impact factor: 4.566

3.  Verification of cardiac mechanics software: benchmark problems and solutions for testing active and passive material behaviour.

Authors:  Sander Land; Viatcheslav Gurev; Sander Arens; Christoph M Augustin; Lukas Baron; Robert Blake; Chris Bradley; Sebastian Castro; Andrew Crozier; Marco Favino; Thomas E Fastl; Thomas Fritz; Hao Gao; Alessio Gizzi; Boyce E Griffith; Daniel E Hurtado; Rolf Krause; Xiaoyu Luo; Martyn P Nash; Simone Pezzuto; Gernot Plank; Simone Rossi; Daniel Ruprecht; Gunnar Seemann; Nicolas P Smith; Joakim Sundnes; J Jeremy Rice; Natalia Trayanova; Dafang Wang; Zhinuo Jenny Wang; Steven A Niederer
Journal:  Proc Math Phys Eng Sci       Date:  2015-12-08       Impact factor: 2.704

4.  Improved identifiability of myocardial material parameters by an energy-based cost function.

Authors:  Anastasia Nasopoulou; Anoop Shetty; Jack Lee; David Nordsletten; C Aldo Rinaldi; Pablo Lamata; Steven Niederer
Journal:  Biomech Model Mechanobiol       Date:  2017-02-10

5.  In vivo estimation of elastic heterogeneity in an infarcted human heart.

Authors:  Gabriel Balaban; Henrik Finsberg; Simon Funke; Trine F Håland; Einar Hopp; Joakim Sundnes; Samuel Wall; Marie E Rognes
Journal:  Biomech Model Mechanobiol       Date:  2018-05-17

6.  Balance of Active, Passive, and Anatomical Cardiac Properties in Doxorubicin-Induced Heart Failure.

Authors:  Alexandre Lewalle; Sander Land; Jort J Merken; Anne Raafs; Pilar Sepúlveda; Stéphane Heymans; Jos Kleinjans; Steven A Niederer
Journal:  Biophys J       Date:  2019-07-29       Impact factor: 4.033

7.  In silico identification of potential calcium dynamics and sarcomere targets for recovering left ventricular function in rat heart failure with preserved ejection fraction.

Authors:  Stefano Longobardi; Anna Sher; Steven A Niederer
Journal:  PLoS Comput Biol       Date:  2021-12-06       Impact factor: 4.475

  7 in total

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