Literature DB >> 23221083

A mathematical model to study the dynamics of epithelial cellular networks.

Alessandro Abate1, Stéphane Vincent, Roel Dobbe, Alberto Silletti, Neal Master, Jeffrey D Axelrod, Claire J Tomlin.   

Abstract

Epithelia are sheets of connected cells that are essential across the animal kingdom. Experimental observations suggest that the dynamical behavior of many single-layered epithelial tissues has strong analogies with that of specific mechanical systems, namely large networks consisting of point masses connected through spring-damper elements and undergoing the influence of active and dissipating forces. Based on this analogy, this work develops a modeling framework to enable the study of the mechanical properties and of the dynamic behavior of large epithelial cellular networks. The model is built first by creating a network topology that is extracted from the actual cellular geometry as obtained from experiments, then by associating a mechanical structure and dynamics to the network via spring-damper elements. This scalable approach enables running simulations of large network dynamics: the derived modeling framework in particular is predisposed to be tailored to study general dynamics (for example, morphogenesis) of various classes of single-layered epithelial cellular networks. In this contribution, we test the model on a case study of the dorsal epithelium of the Drosophila melanogaster embryo during early dorsal closure (and, less conspicuously, germband retraction).

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Year:  2012        PMID: 23221083      PMCID: PMC3558995          DOI: 10.1109/TCBB.2012.126

Source DB:  PubMed          Journal:  IEEE/ACM Trans Comput Biol Bioinform        ISSN: 1545-5963            Impact factor:   3.710


  27 in total

1.  Cell prestress. I. Stiffness and prestress are closely associated in adherent contractile cells.

Authors:  Ning Wang; Iva Marija Tolić-Nørrelykke; Jianxin Chen; Srboljub M Mijailovich; James P Butler; Jeffrey J Fredberg; Dimitrije Stamenović
Journal:  Am J Physiol Cell Physiol       Date:  2002-03       Impact factor: 4.249

2.  Intracellular stress tomography reveals stress focusing and structural anisotropy in cytoskeleton of living cells.

Authors:  Shaohua Hu; Jianxin Chen; Ben Fabry; Yasushi Numaguchi; Andrew Gouldstone; Donald E Ingber; Jeffrey J Fredberg; James P Butler; Ning Wang
Journal:  Am J Physiol Cell Physiol       Date:  2003-07-02       Impact factor: 4.249

3.  Drosophila morphogenesis: tissue force laws and the modeling of dorsal closure.

Authors:  Anita T Layton; Yusuke Toyama; Guo-Qiang Yang; Glenn S Edwards; Daniel P Kiehart; Stephanos Venakides
Journal:  HFSP J       Date:  2009-12-15

Review 4.  Tissue cells feel and respond to the stiffness of their substrate.

Authors:  Dennis E Discher; Paul Janmey; Yu-Li Wang
Journal:  Science       Date:  2005-11-18       Impact factor: 47.728

5.  Micromechanical architecture of the endothelial cell cortex.

Authors:  Devrim Pesen; Jan H Hoh
Journal:  Biophys J       Date:  2004-10-15       Impact factor: 4.033

Review 6.  The cell as a material.

Authors:  Karen E Kasza; Amy C Rowat; Jiayu Liu; Thomas E Angelini; Clifford P Brangwynne; Gijsje H Koenderink; David A Weitz
Journal:  Curr Opin Cell Biol       Date:  2006-12-15       Impact factor: 8.382

7.  Upregulation of forces and morphogenic asymmetries in dorsal closure during Drosophila development.

Authors:  X G Peralta; Y Toyama; M S Hutson; R Montague; S Venakides; D P Kiehart; G S Edwards
Journal:  Biophys J       Date:  2007-01-11       Impact factor: 4.033

8.  A passivity-based stability criterion for a class of biochemical reaction networks.

Authors:  Murat Arcak; Eduardo D Sontag
Journal:  Math Biosci Eng       Date:  2008-01       Impact factor: 2.080

9.  Mechanical determinants of epithelium thickness in early-stage embryos.

Authors:  Xiaoguang Chen; G Wayne Brodland
Journal:  J Mech Behav Biomed Mater       Date:  2008-12-14

10.  A multi-modular tensegrity model of an actin stress fiber.

Authors:  Yaozhi Luo; Xian Xu; Tanmay Lele; Sanjay Kumar; Donald E Ingber
Journal:  J Biomech       Date:  2008-07-15       Impact factor: 2.712

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  2 in total

1.  Structural Characterization and Statistical-Mechanical Model of Epidermal Patterns.

Authors:  Duyu Chen; Wen Yih Aw; Danelle Devenport; Salvatore Torquato
Journal:  Biophys J       Date:  2016-12-06       Impact factor: 4.033

2.  The actin cable is dispensable in directing dorsal closure dynamics but neutralizes mechanical stress to prevent scarring in the Drosophila embryo.

Authors:  Antoine Ducuing; Stéphane Vincent
Journal:  Nat Cell Biol       Date:  2016-10-17       Impact factor: 28.824

  2 in total

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