Literature DB >> 23217707

Tet3 CXXC domain and dioxygenase activity cooperatively regulate key genes for Xenopus eye and neural development.

Yufei Xu1, Chao Xu, Akiko Kato, Wolfram Tempel, Jose Garcia Abreu, Chuanbing Bian, Yeguang Hu, Di Hu, Bin Zhao, Tanja Cerovina, Jianbo Diao, Feizhen Wu, Housheng Hansen He, Qingyan Cui, Erin Clark, Chun Ma, Andrew Barbara, Gert Jan C Veenstra, Guoliang Xu, Ursula B Kaiser, X Shirley Liu, Stephen P Sugrue, Xi He, Jinrong Min, Yoichi Kato, Yujiang Geno Shi.   

Abstract

Ten-Eleven Translocation (Tet) family of dioxygenases dynamically regulates DNA methylation and has been implicated in cell lineage differentiation and oncogenesis. Yet their functions and mechanisms of action in gene regulation and embryonic development are largely unknown. Here, we report that Xenopus Tet3 plays an essential role in early eye and neural development by directly regulating a set of key developmental genes. Tet3 is an active 5mC hydroxylase regulating the 5mC/5hmC status at target gene promoters. Biochemical and structural studies further demonstrate that the Tet3 CXXC domain is critical for specific Tet3 targeting. Finally, we show that the enzymatic activity and CXXC domain are both crucial for Tet3's biological function. Together, these findings define Tet3 as a transcription regulator and reveal a molecular mechanism by which the 5mC hydroxylase and DNA binding activities of Tet3 cooperate to control target gene expression and embryonic development.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 23217707      PMCID: PMC3705565          DOI: 10.1016/j.cell.2012.11.014

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  30 in total

1.  Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome.

Authors:  Miao Yu; Gary C Hon; Keith E Szulwach; Chun-Xiao Song; Liang Zhang; Audrey Kim; Xuekun Li; Qing Dai; Yin Shen; Beomseok Park; Jung-Hyun Min; Peng Jin; Bing Ren; Chuan He
Journal:  Cell       Date:  2012-05-17       Impact factor: 41.582

2.  TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity.

Authors:  Kristine Williams; Jesper Christensen; Marianne Terndrup Pedersen; Jens V Johansen; Paul A C Cloos; Juri Rappsilber; Kristian Helin
Journal:  Nature       Date:  2011-04-13       Impact factor: 49.962

3.  Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA.

Authors:  Yu-Fei He; Bin-Zhong Li; Zheng Li; Peng Liu; Yang Wang; Qingyu Tang; Jianping Ding; Yingying Jia; Zhangcheng Chen; Lin Li; Yan Sun; Xiuxue Li; Qing Dai; Chun-Xiao Song; Kangling Zhang; Chuan He; Guo-Liang Xu
Journal:  Science       Date:  2011-08-04       Impact factor: 47.728

4.  Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells.

Authors:  Kian Peng Koh; Akiko Yabuuchi; Sridhar Rao; Yun Huang; Kerrianne Cunniff; Julie Nardone; Asta Laiho; Mamta Tahiliani; Cesar A Sommer; Gustavo Mostoslavsky; Riitta Lahesmaa; Stuart H Orkin; Scott J Rodig; George Q Daley; Anjana Rao
Journal:  Cell Stem Cell       Date:  2011-02-04       Impact factor: 24.633

5.  5-Hydroxymethylcytosine in the mammalian zygote is linked with epigenetic reprogramming.

Authors:  Mark Wossidlo; Toshinobu Nakamura; Konstantin Lepikhov; C Joana Marques; Valeri Zakhartchenko; Michele Boiani; Julia Arand; Toru Nakano; Wolf Reik; Jörn Walter
Journal:  Nat Commun       Date:  2011       Impact factor: 14.919

6.  Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine.

Authors:  Khursheed Iqbal; Seung-Gi Jin; Gerd P Pfeifer; Piroska E Szabó
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-14       Impact factor: 11.205

7.  Acquired mutations in TET2 are common in myelodysplastic syndromes.

Authors:  Saskia M C Langemeijer; Roland P Kuiper; Marieke Berends; Ruth Knops; Mariam G Aslanyan; Marion Massop; Ellen Stevens-Linders; Patricia van Hoogen; Ad Geurts van Kessel; Reinier A P Raymakers; Eveline J Kamping; Gregor E Verhoef; Estelle Verburgh; Anne Hagemeijer; Peter Vandenberghe; Theo de Witte; Bert A van der Reijden; Joop H Jansen
Journal:  Nat Genet       Date:  2009-05-31       Impact factor: 38.330

8.  Mutation in TET2 in myeloid cancers.

Authors:  François Delhommeau; Sabrina Dupont; Véronique Della Valle; Chloé James; Severine Trannoy; Aline Massé; Olivier Kosmider; Jean-Pierre Le Couedic; Fabienne Robert; Antonio Alberdi; Yann Lécluse; Isabelle Plo; François J Dreyfus; Christophe Marzac; Nicole Casadevall; Catherine Lacombe; Serge P Romana; Philippe Dessen; Jean Soulier; Franck Viguié; Michaela Fontenay; William Vainchenker; Olivier A Bernard
Journal:  N Engl J Med       Date:  2009-05-28       Impact factor: 91.245

Review 9.  Tet family proteins and 5-hydroxymethylcytosine in development and disease.

Authors:  Li Tan; Yujiang Geno Shi
Journal:  Development       Date:  2012-06       Impact factor: 6.868

10.  CXXC domain of human DNMT1 is essential for enzymatic activity.

Authors:  Mihika Pradhan; Pierre-Olivier Estève; Hang Gyeong Chin; Mala Samaranayke; Gun-Do Kim; Sriharsa Pradhan
Journal:  Biochemistry       Date:  2008-08-29       Impact factor: 3.162

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  118 in total

1.  Role of Tet1/3 Genes and Chromatin Remodeling Genes in Cerebellar Circuit Formation.

Authors:  Xiaodong Zhu; David Girardo; Eve-Ellen Govek; Keisha John; Marian Mellén; Pablo Tamayo; Jill P Mesirov; Mary E Hatten
Journal:  Neuron       Date:  2015-12-17       Impact factor: 17.173

Review 2.  Epigenetic regulation of early neural fate commitment.

Authors:  Yunbo Qiao; Xianfa Yang; Naihe Jing
Journal:  Cell Mol Life Sci       Date:  2016-01-22       Impact factor: 9.261

3.  Methylcytosine dioxygenase TET3 interacts with thyroid hormone nuclear receptors and stabilizes their association to chromatin.

Authors:  Wenyue Guan; Romain Guyot; Jacques Samarut; Frédéric Flamant; Jiemin Wong; Karine Cécile Gauthier
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-17       Impact factor: 11.205

4.  The mysterious presence of a 5-methylcytosine oxidase in the Drosophila genome: possible explanations.

Authors:  Thomas L Dunwell; Liam J McGuffin; Jim M Dunwell; Gerd P Pfeifer
Journal:  Cell Cycle       Date:  2013-09-19       Impact factor: 4.534

Review 5.  DNA modifications and neurological disorders.

Authors:  Yi-Lan Weng; Ran An; Jaehoon Shin; Hongjun Song; Guo-li Ming
Journal:  Neurotherapeutics       Date:  2013-10       Impact factor: 7.620

Review 6.  The Mechanisms of Generation, Recognition, and Erasure of DNA 5-Methylcytosine and Thymine Oxidations.

Authors:  Hideharu Hashimoto; Xing Zhang; Paula M Vertino; Xiaodong Cheng
Journal:  J Biol Chem       Date:  2015-07-07       Impact factor: 5.157

7.  Neocortical Tet3-mediated accumulation of 5-hydroxymethylcytosine promotes rapid behavioral adaptation.

Authors:  Xiang Li; Wei Wei; Qiong-Yi Zhao; Jocelyn Widagdo; Danay Baker-Andresen; Charlotte R Flavell; Ana D'Alessio; Yi Zhang; Timothy W Bredy
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-22       Impact factor: 11.205

Review 8.  Protein Interactions at Oxidized 5-Methylcytosine Bases.

Authors:  Gerd P Pfeifer; Piroska E Szabó; Jikui Song
Journal:  J Mol Biol       Date:  2019-08-08       Impact factor: 5.469

Review 9.  Detecting and interpreting DNA methylation marks.

Authors:  Ren Ren; John R Horton; Xing Zhang; Robert M Blumenthal; Xiaodong Cheng
Journal:  Curr Opin Struct Biol       Date:  2018-07-19       Impact factor: 6.809

10.  DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain.

Authors:  Yasuhiro Kyono; Samhitha Raj; Christopher J Sifuentes; Nicolas Buisine; Laurent Sachs; Robert J Denver
Journal:  Dev Biol       Date:  2020-03-31       Impact factor: 3.582

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