Literature DB >> 23209250

Draft genome sequence of the flocculating Zymomonas mobilis strain ZM401 (ATCC 31822).

Ning Zhao1, Yun Bai, Xin-Qing Zhao, Zhen-Yu Yang, Feng-Wu Bai.   

Abstract

Zymomonas mobilis ZM401 is a flocculating strain which can be self-immobilized within fermentors for a high-cell-density culture to improve ethanol productivity, as well as high-gravity fermentation to increase ethanol titer, due to its improved ethanol tolerance associated with the morphological change. Here, we report its draft genome sequence.

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Year:  2012        PMID： 23209250      PMCID： PMC3510618          DOI： 10.1128/JB.01947-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  14 in total

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Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

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Authors:  Daniel H Huson; Alexander F Auch; Ji Qi; Stephan C Schuster
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4.  PolyScan: an automatic indel and SNP detection approach to the analysis of human resequencing data.

Authors:  Ken Chen; Michael D McLellan; Li Ding; Michael C Wendl; Yumi Kasai; Richard K Wilson; Elaine R Mardis
Journal:  Genome Res       Date:  2007-04-06       Impact factor: 9.043

5.  Tandem repeats finder: a program to analyze DNA sequences.

Authors:  G Benson
Journal:  Nucleic Acids Res       Date:  1999-01-15       Impact factor: 16.971

6.  Genome-wide transcriptomic analysis of a flocculent strain of Zymomonas mobilis.

Authors:  Young Jae Jeon; Zhao Xun; Ping Su; Peter L Rogers
Journal:  Appl Microbiol Biotechnol       Date:  2012-02-22       Impact factor: 4.813

Review 7.  Ethanol fermentation technologies from sugar and starch feedstocks.

Authors:  F W Bai; W A Anderson; M Moo-Young
Journal:  Biotechnol Adv       Date:  2007-09-08       Impact factor: 14.227

8.  Rfam: annotating non-coding RNAs in complete genomes.

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Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

9.  Gene finding in novel genomes.

Authors:  Ian Korf
Journal:  BMC Bioinformatics       Date:  2004-05-14       Impact factor: 3.169

10.  The COG database: an updated version includes eukaryotes.

Authors:  Roman L Tatusov; Natalie D Fedorova; John D Jackson; Aviva R Jacobs; Boris Kiryutin; Eugene V Koonin; Dmitri M Krylov; Raja Mazumder; Sergei L Mekhedov; Anastasia N Nikolskaya; B Sridhar Rao; Sergei Smirnov; Alexander V Sverdlov; Sona Vasudevan; Yuri I Wolf; Jodie J Yin; Darren A Natale
Journal:  BMC Bioinformatics       Date:  2003-09-11       Impact factor: 3.169
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  8 in total

1.  Characterization of a thermo-adapted strain of Zymomonas mobilis for ethanol production at high temperature.

Authors:  Jatupat Samappito; Mamoru Yamada; Preekamol Klanrit; Pornthap Thanonkeo
Journal:  3 Biotech       Date:  2018-11-09       Impact factor: 2.406

Review 2.  Zymomonas mobilis: a novel platform for future biorefineries.

Authors:  Ming Xiong He; Bo Wu; Han Qin; Zhi Yong Ruan; Fu Rong Tan; Jing Li Wang; Zong Xia Shui; Li Chun Dai; Qi Li Zhu; Ke Pan; Xiao Yu Tang; Wen Guo Wang; Qi Chun Hu
Journal:  Biotechnol Biofuels       Date:  2014-07-02       Impact factor: 6.040

3.  Insights into acetate toxicity in Zymomonas mobilis 8b using different substrates.

Authors:  Shihui Yang; Mary Ann Franden; Steven D Brown; Yat-Chen Chou; Philip T Pienkos; Min Zhang
Journal:  Biotechnol Biofuels       Date:  2014-09-30       Impact factor: 6.040

4.  Metabolic engineering of Zymomonas mobilis for anaerobic isobutanol production.

Authors:  Mengyue Qiu; Wei Shen; Xiongyin Yan; Qiaoning He; Dongbo Cai; Shouwen Chen; Hui Wei; Eric P Knoshaug; Min Zhang; Michael E Himmel; Shihui Yang
Journal:  Biotechnol Biofuels       Date:  2020-01-25       Impact factor: 6.040

5.  Transcriptomic Profiles of Zymomonas mobilis 8b to Furfural Acute and Long-Term Stress in Both Glucose and Xylose Conditions.

Authors:  Shihui Yang; Mary Ann Franden; Xia Wang; Yat-Chen Chou; Yun Hu; Steven D Brown; Philip T Pienkos; Min Zhang
Journal:  Front Microbiol       Date:  2020-01-23       Impact factor: 5.640

Review 6.  Zymomonas mobilis as a model system for production of biofuels and biochemicals.

Authors:  Shihui Yang; Qiang Fei; Yaoping Zhang; Lydia M Contreras; Sagar M Utturkar; Steven D Brown; Michael E Himmel; Min Zhang
Journal:  Microb Biotechnol       Date:  2016-09-15       Impact factor: 5.813

7.  Genome comparison of different Zymomonas mobilis strains provides insights on conservation of the evolution.

Authors:  Chen Chen; Linfeng Wu; Qinghua Cao; Huanhuan Shao; Xuedan Li; Yizheng Zhang; Haiyan Wang; Xuemei Tan
Journal:  PLoS One       Date:  2018-04-25       Impact factor: 3.240

8.  Establishment and application of a CRISPR-Cas12a assisted genome-editing system in Zymomonas mobilis.

Authors:  Wei Shen; Jun Zhang; Binan Geng; Mengyue Qiu; Mimi Hu; Qing Yang; Weiwei Bao; Yubei Xiao; Yanli Zheng; Wenfang Peng; Guimin Zhang; Lixin Ma; Shihui Yang
Journal:  Microb Cell Fact       Date:  2019-10-03       Impact factor: 5.328
  8 in total

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