Literature DB >> 23209236

Draft genome sequence of Agrobacterium albertimagni strain AOL15.

William L Trimble1, Le T Phung, Folker Meyer, Jack A Gilbert, Simon Silver.   

Abstract

Agrobacterium albertimagni strain AOL15 is an alphaproteobacterium isolated from arsenite-oxidizing biofilms whose draft genome contains 5.1 Mb in 55 contigs with 61.2% GC content and includes a 21-gene arsenic gene island. This is the first available genome for this species and the second Agrobacterium arsenic gene island.

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Year:  2012        PMID： 23209236      PMCID： PMC3510623          DOI： 10.1128/JB.01912-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  12 in total

1.  The genome of the natural genetic engineer Agrobacterium tumefaciens C58.

Authors:  D W Wood; J C Setubal; R Kaul; D E Monks; J P Kitajima; V K Okura; Y Zhou; L Chen; G E Wood; N F Almeida; L Woo; Y Chen; I T Paulsen; J A Eisen; P D Karp; D Bovee; P Chapman; J Clendenning; G Deatherage; W Gillet; C Grant; T Kutyavin; R Levy; M J Li; E McClelland; A Palmieri; C Raymond; G Rouse; C Saenphimmachak; Z Wu; P Romero; D Gordon; S Zhang; H Yoo; Y Tao; P Biddle; M Jung; W Krespan; M Perry; B Gordon-Kamm; L Liao; S Kim; C Hendrick; Z Y Zhao; M Dolan; F Chumley; S V Tingey; J F Tomb; M P Gordon; M V Olson; E W Nester
Journal:  Science       Date:  2001-12-14       Impact factor: 47.728

2.  Fast algorithms for large-scale genome alignment and comparison.

Authors:  Arthur L Delcher; Adam Phillippy; Jane Carlton; Steven L Salzberg
Journal:  Nucleic Acids Res       Date:  2002-06-01       Impact factor: 16.971

3.  Draft genome of halomonas species strain GFAJ-1 (ATCC BAA-2256).

Authors:  Le T Phung; Simon Silver; William L Trimble; Jack A Gilbert
Journal:  J Bacteriol       Date:  2012-04       Impact factor: 3.490

4.  Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs.

Authors:  Bastien Chevreux; Thomas Pfisterer; Bernd Drescher; Albert J Driesel; Werner E G Müller; Thomas Wetter; Sándor Suhai
Journal:  Genome Res       Date:  2004-05-12       Impact factor: 9.043

5.  Genome sequence of the arsenite-oxidizing strain Agrobacterium tumefaciens 5A.

Authors:  Xiuli Hao; Yanbing Lin; Laurel Johnstone; Guanghui Liu; Gejiao Wang; Gehong Wei; Timothy McDermott; Christopher Rensing
Journal:  J Bacteriol       Date:  2012-02       Impact factor: 3.490

6.  Involvement of RpoN in regulating bacterial arsenite oxidation.

Authors:  Yoon-Suk Kang; Brian Bothner; Christopher Rensing; Timothy R McDermott
Journal:  Appl Environ Microbiol       Date:  2012-06-01       Impact factor: 4.792

Review 7.  Genes and enzymes involved in bacterial oxidation and reduction of inorganic arsenic.

Authors:  Simon Silver; L T Phung
Journal:  Appl Environ Microbiol       Date:  2005-02       Impact factor: 4.792

8.  Draft genome sequence of Achromobacter piechaudii strain HLE.

Authors:  William L Trimble; Le T Phung; Folker Meyer; Simon Silver; Jack A Gilbert
Journal:  J Bacteriol       Date:  2012-11       Impact factor: 3.490

9.  Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58.

Authors:  B Goodner; G Hinkle; S Gattung; N Miller; M Blanchard; B Qurollo; B S Goldman; Y Cao; M Askenazi; C Halling; L Mullin; K Houmiel; J Gordon; M Vaudin; O Iartchouk; A Epp; F Liu; C Wollam; M Allinger; D Doughty; C Scott; C Lappas; B Markelz; C Flanagan; C Crowell; J Gurson; C Lomo; C Sear; G Strub; C Cielo; S Slater
Journal:  Science       Date:  2001-12-14       Impact factor: 47.728

10.  Genome sequences of three agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria.

Authors:  Steven C Slater; Barry S Goldman; Brad Goodner; João C Setubal; Stephen K Farrand; Eugene W Nester; Thomas J Burr; Lois Banta; Allan W Dickerman; Ian Paulsen; Leon Otten; Garret Suen; Roy Welch; Nalvo F Almeida; Frank Arnold; Oliver T Burton; Zijin Du; Adam Ewing; Eric Godsy; Sara Heisel; Kathryn L Houmiel; Jinal Jhaveri; Jing Lu; Nancy M Miller; Stacie Norton; Qiang Chen; Waranyoo Phoolcharoen; Victoria Ohlin; Dan Ondrusek; Nicole Pride; Shawn L Stricklin; Jian Sun; Cathy Wheeler; Lindsey Wilson; Huijun Zhu; Derek W Wood
Journal:  J Bacteriol       Date:  2009-02-27       Impact factor: 3.490
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  2 in total

1.  Organization and regulation of the arsenite oxidase operon of the moderately acidophilic and facultative chemoautotrophic Thiomonas arsenitoxydans.

Authors:  Djamila Slyemi; Danielle Moinier; Emmanuel Talla; Violaine Bonnefoy
Journal:  Extremophiles       Date:  2013-08-24       Impact factor: 2.395

2.  In silico analysis of bacterial arsenic islands reveals remarkable synteny and functional relatedness between arsenate and phosphate.

Authors:  Hang Li; Mingshun Li; Yinyan Huang; Christopher Rensing; Gejiao Wang
Journal:  Front Microbiol       Date:  2013-11-20       Impact factor: 5.640
  2 in total

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