Literature DB >> 23205153

Characterizing the memory of the GAL regulatory network in Saccharomyces cerevisiae.

Vishwesh V Kulkarni1, Venkatesh Kareenhalli, Ganesh A Viswananthan, Marc Riedel.   

Abstract

Genetic regulatory networks respond dynamically to perturbations in the intracellular and extracellular environments of an organism. The GAL system in the yeast Saccharomyces cerevisiae has evolved to utilize galactose as an alternative carbon and energy source, in the absence of glucose in the environment. We present a dynamic model for GAL system in Saccharomyces cerevisiae, which includes a novel mechanism for Gal3p activation upon induction with galactose. The modification enables the model to simulate the experimental observation that in absence of galactose, oversynthesis of Gal3p can also induce the GAL system. We then characterize the memory of the GAL system as the domain of attraction of the steady states.

Entities:  

Keywords:  Cellular memory; Domain of attraction; GAL system; ODE model; Saccharomyces cerevisiae

Year:  2011        PMID: 23205153      PMCID: PMC3234316          DOI: 10.1007/s11693-011-9086-3

Source DB:  PubMed          Journal:  Syst Synth Biol        ISSN: 1872-5325


  19 in total

1.  Glucose represses the lactose-galactose regulon in Kluyveromyces lactis through a SNF1 and MIG1- dependent pathway that modulates galactokinase (GAL1) gene expression.

Authors:  J Dong; R C Dickson
Journal:  Nucleic Acids Res       Date:  1997-09-15       Impact factor: 16.971

2.  Autoregulation of regulatory proteins is key for dynamic operation of GAL switch in Saccharomyces cerevisiae.

Authors:  Anurag Ruhela; Malkhey Verma; Jeremy S Edwards; P J Bhat; Sharad Bhartiya; K V Venkatesh
Journal:  FEBS Lett       Date:  2004-10-08       Impact factor: 4.124

3.  Enhancement of cellular memory by reducing stochastic transitions.

Authors:  Murat Acar; Attila Becskei; Alexander van Oudenaarden
Journal:  Nature       Date:  2005-05-12       Impact factor: 49.962

4.  Activation of Gal4p by galactose-dependent interaction of galactokinase and Gal80p.

Authors:  F T Zenke; R Engles; V Vollenbroich; J Meyer; C P Hollenberg; K D Breunig
Journal:  Science       Date:  1996-06-14       Impact factor: 47.728

5.  The adaptive filter of the yeast galactose pathway.

Authors:  Serge Smidtas; Vincent Schächter; François Képès
Journal:  J Theor Biol       Date:  2006-04-27       Impact factor: 2.691

6.  The insertion of two amino acids into a transcriptional inducer converts it into a galactokinase.

Authors:  A Platt; H C Ross; S Hankin; R J Reece
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-28       Impact factor: 11.205

7.  Cell signaling can direct either binary or graded transcriptional responses.

Authors:  S R Biggar; G R Crabtree
Journal:  EMBO J       Date:  2001-06-15       Impact factor: 11.598

8.  Galactose-dependent reversible interaction of Gal3p with Gal80p in the induction pathway of Gal4p-activated genes of Saccharomyces cerevisiae.

Authors:  K Yano; T Fukasawa
Journal:  Proc Natl Acad Sci U S A       Date:  1997-03-04       Impact factor: 11.205

9.  Multiple mechanisms provide rapid and stringent glucose repression of GAL gene expression in Saccharomyces cerevisiae.

Authors:  M Johnston; J S Flick; T Pexton
Journal:  Mol Cell Biol       Date:  1994-06       Impact factor: 4.272

10.  The yeast galactose genetic switch is mediated by the formation of a Gal4p-Gal80p-Gal3p complex.

Authors:  A Platt; R J Reece
Journal:  EMBO J       Date:  1998-07-15       Impact factor: 11.598

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  1 in total

Review 1.  The yeast galactose network as a quantitative model for cellular memory.

Authors:  Sarah R Stockwell; Christian R Landry; Scott A Rifkin
Journal:  Mol Biosyst       Date:  2014-10-20
  1 in total

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