Literature DB >> 15474022

Autoregulation of regulatory proteins is key for dynamic operation of GAL switch in Saccharomyces cerevisiae.

Anurag Ruhela1, Malkhey Verma, Jeremy S Edwards, P J Bhat, Sharad Bhartiya, K V Venkatesh.   

Abstract

Autoregulation and nucleocytoplasmic shuttling play important roles in the operation of the GAL regulatory system. However, the significance of these mechanisms in the overall operation of the switch is unclear. In this work, we develop a dynamic model for the GAL system and further validate the same using steady-state and dynamic experimental expression data. Next, the model is used to delineate the relevance of shuttling and autoregulation in response to inducing, repressing, and non-inducing-non-repressing media. The analysis indicates that autoregulation of the repressor, Gal80p, is key in obtaining three distinct steady states in response to the three media. In particular, the analysis rationalizes the intuitively paradoxical observation that the concentration of repressor, Gal80p, actually increases in response to an increase in the inducer concentration. On the other hand, although nucleocytoplasmic shuttling does not affect the dynamics of the system, it plays a dominant role in obtaining a sensitive response to galactose. The dynamic model was also used to obtain insights on the preculturing effect on the system behavior. Copyright 2004 Federation of European Biochemical Societies

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Year:  2004        PMID: 15474022     DOI: 10.1016/j.febslet.2004.09.001

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  6 in total

1.  Multiple feedback loop design in the tryptophan regulatory network of Escherichia coli suggests a paradigm for robust regulation of processes in series.

Authors:  Sharad Bhartiya; Nikhil Chaudhary; K V Venkatesh; Francis J Doyle
Journal:  J R Soc Interface       Date:  2006-06-22       Impact factor: 4.118

2.  Dynamic analysis of the KlGAL regulatory system in Kluyveromyces lactis: a comparative study with Saccharomyces cerevisiae.

Authors:  Venkat Reddy Pannala; K Y Ahammed Sherief; Sharad Bhartiya; K V Venkatesh
Journal:  Syst Synth Biol       Date:  2011-06-03

3.  Characterizing the memory of the GAL regulatory network in Saccharomyces cerevisiae.

Authors:  Vishwesh V Kulkarni; Venkatesh Kareenhalli; Ganesh A Viswananthan; Marc Riedel
Journal:  Syst Synth Biol       Date:  2011-09-20

4.  Modeling the evolution of a classic genetic switch.

Authors:  Christos Josephides; Alan M Moses
Journal:  BMC Syst Biol       Date:  2011-02-05

5.  Stochastic analysis of the GAL genetic switch in Saccharomyces cerevisiae: modeling and experiments reveal hierarchy in glucose repression.

Authors:  Vinay Prasad; K V Venkatesh
Journal:  BMC Syst Biol       Date:  2008-11-17

6.  Validation of a model of the GAL regulatory system via robustness analysis of its bistability characteristics.

Authors:  Luca Salerno; Carlo Cosentino; Alessio Merola; Declan G Bates; Francesco Amato
Journal:  BMC Syst Biol       Date:  2013-05-17
  6 in total

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