Literature DB >> 23204388

A functional isopenicillin N synthase in an animal genome.

Dick Roelofs1, Martijn J T N Timmermans, Paul Hensbergen, Hans van Leeuwen, Jessica Koopman, Anna Faddeeva, Wouter Suring, Tjalf E de Boer, Janine Mariën, Remon Boer, Roel Bovenberg, Nico M van Straalen.   

Abstract

Horizontal transfer of genes is widespread among prokaryotes, but is less common between microorganisms and animals. Here, we present evidence for the presence of a gene encoding functional isopenicillin N synthase, an enzyme in the β-lactam antibiotics biosynthesis pathway, in the genome of the soil-living collembolan species, Folsomia candida (FcIPNS). At present, this gene is only known from bacteria and fungi, as is the capacity to produce β-lactam antibiotics. The FcIPNS gene was located on two genomic contigs, was physically linked to a predicted insect ATP-binding cassette transporter gene, and contained three introns each flanked by eukaryotic splicing recognition sites (GT/AG). Homology searches revealed no similarity between these introns and the FcIPNS regions of bacteria or fungi. All amino acids conserved across bacteria and fungi were also conserved in F. candida. Recombinant FcIPNS was able to convert its substrate amino δ-(l-α-aminoadipyl)-l-cysteinyl-d-valine into isopenicillin N, providing strong evidence that FcIPNS is functional. Phylogenetic analysis clustered FcIPNS outside the bacterial IPNS clade, and also outside the fungal IPNS clade, suggesting an ancient gene transfer followed by divergence in the F. candida genome. In conclusion, the data suggest that the soil-living collembolan F. candida has assimilated the capacity for antibacterial activity by horizontal gene transfer, which may be an important adaptive trait in the microbe-dominated soil ecosystem.

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Year:  2012        PMID: 23204388     DOI: 10.1093/molbev/mss269

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  13 in total

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Authors:  Stephanie Sibinelli-Sousa; Julia Takuno Hespanhol; Ethel Bayer-Santos
Journal:  J Bacteriol       Date:  2021-03-08       Impact factor: 3.490

2.  X-ray free-electron laser studies reveal correlated motion during isopenicillin N synthase catalysis.

Authors:  Patrick Rabe; Jos J A G Kamps; Kyle D Sutherlin; James D S Linyard; Pierre Aller; Cindy C Pham; Hiroki Makita; Ian Clifton; Michael A McDonough; Thomas M Leissing; Denis Shutin; Pauline A Lang; Agata Butryn; Jürgen Brem; Sheraz Gul; Franklin D Fuller; In-Sik Kim; Mun Hon Cheah; Thomas Fransson; Asmit Bhowmick; Iris D Young; Lee O'Riordan; Aaron S Brewster; Ilaria Pettinati; Margaret Doyle; Yasumasa Joti; Shigeki Owada; Kensuke Tono; Alexander Batyuk; Mark S Hunter; Roberto Alonso-Mori; Uwe Bergmann; Robin L Owen; Nicholas K Sauter; Timothy D W Claridge; Carol V Robinson; Vittal K Yachandra; Junko Yano; Jan F Kern; Allen M Orville; Christopher J Schofield
Journal:  Sci Adv       Date:  2021-08-20       Impact factor: 14.957

Review 3.  Mining genomes to illuminate the specialized chemistry of life.

Authors:  Marnix H Medema; Tristan de Rond; Bradley S Moore
Journal:  Nat Rev Genet       Date:  2021-06-03       Impact factor: 53.242

Review 4.  Penicillium chrysogenum, a Vintage Model with a Cutting-Edge Profile in Biotechnology.

Authors:  Francisco Fierro; Inmaculada Vaca; Nancy I Castillo; Ramón Ovidio García-Rico; Renato Chávez
Journal:  Microorganisms       Date:  2022-03-06

5.  Collembolan Transcriptomes Highlight Molecular Evolution of Hexapods and Provide Clues on the Adaptation to Terrestrial Life.

Authors:  A Faddeeva; R A Studer; K Kraaijeveld; D Sie; B Ylstra; J Mariën; H J M op den Camp; E Datema; J T den Dunnen; N M van Straalen; D Roelofs
Journal:  PLoS One       Date:  2015-06-15       Impact factor: 3.240

6.  Occurrence of Isopenicillin-N-Synthase Homologs in Bioluminescent Ctenophores and Implications for Coelenterazine Biosynthesis.

Authors:  Warren R Francis; Nathan C Shaner; Lynne M Christianson; Meghan L Powers; Steven H D Haddock
Journal:  PLoS One       Date:  2015-06-30       Impact factor: 3.240

7.  Coping with living in the soil: the genome of the parthenogenetic springtail Folsomia candida.

Authors:  Anna Faddeeva-Vakhrusheva; Ken Kraaijeveld; Martijn F L Derks; Seyed Yahya Anvar; Valeria Agamennone; Wouter Suring; Andries A Kampfraath; Jacintha Ellers; Giang Le Ngoc; Cornelis A M van Gestel; Janine Mariën; Sandra Smit; Nico M van Straalen; Dick Roelofs
Journal:  BMC Genomics       Date:  2017-06-28       Impact factor: 3.969

8.  Draft Genome Sequence of Bacillus toyonensis VU-DES13, Isolated from Folsomia candida (Collembola: Entomobryidae).

Authors:  Thierry K S Janssens; Tjalf E de Boer; Valeria Agamennone; Niels Zaagman; Nico M van Straalen; Dick Roelofs
Journal:  Genome Announc       Date:  2017-05-11

9.  Transcriptome analysis of the two unrelated fungal β-lactam producers Acremonium chrysogenum and Penicillium chrysogenum: Velvet-regulated genes are major targets during conventional strain improvement programs.

Authors:  Dominik Terfehr; Tim A Dahlmann; Ulrich Kück
Journal:  BMC Genomics       Date:  2017-03-31       Impact factor: 3.969

10.  Biochemical pathways supporting beta-lactam biosynthesis in the springtail Folsomia candida.

Authors:  Wouter Suring; Janine Mariën; Rhody Broekman; Nico M van Straalen; Dick Roelofs
Journal:  Biol Open       Date:  2016-12-15       Impact factor: 2.422

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