| Literature DB >> 23203271 |
Ke Pan1, Chiaki Tanaka, Masanori Inagaki, Ryuichi Higuchi, Tomofumi Miyamoto.
Abstract
Three new ganglioside molecular species, termed PNG-1, PNG-2A, and PNG-2B were isolated from pyloric caeca of the starfish Protoreaster nodosus. Their structures were elucidated using a combination of spectroscopic and chemical methods, and characterized as 1-O-[8-O-methyl-N-acetyl-α-neuraminosyl-(2→3)-β-galactopyranosyl]-ceramide for PNG-1, 1-O-[β-galactofuranosyl-(1→3)-α-galactopyranosyl-(1→4)-8-O-methyl-N-acetyl-α-neuraminosyl-(2→3)-β-galactopyranosyl]-ceramide for PNG-2A, and 1-O-[β-galacto furanosyl-(1→3)-α-galactopyranosyl-(1→9)-N-acetyl-α-neuraminosyl-(2→3)-β-galactopyr anosyl]-ceramide for PNG-2B. PNG-2A and PNG-2B represent the first GM4 elongation products in nature.Entities:
Mesh:
Substances:
Year: 2012 PMID: 23203271 PMCID: PMC3509529 DOI: 10.3390/md10112467
Source DB: PubMed Journal: Mar Drugs ISSN: 1660-3397 Impact factor: 5.118
Figure 1(a) Protoreaster nodosus and (b) Pyloric caeca of P. nodosus.
Figure 2Negative ion FAB-MS spectra of PNG-1 (A), PNG-2A (B) and PNG-2B (C) and their major fragment ion peaks due to cleavage of the glycosidic linkages.
Figure 3The core structures of Gangliosides (GLSs) from P. nodosus. (a) PNC-1 and (b) PNG-1.
1H- and 13C-NMR data of PNG-1, PNG-2A and PNG-2B.
| Position | PNG-1 | PNG-2A | PNG-2B | |||||
|---|---|---|---|---|---|---|---|---|
| LCB | 1a | 4.60 (m) | 68.9 (t) | 4.60 b | 68.8 (t) | 4.21 b | 69.0 (t) | |
| 1b | 4.18 b | 4.20 (m) | 4.62 b | |||||
| 2 | 4.81 (br.s) | 50.6 (d) | 4.82 (br.s) | 50.8 (d) | 4.83 (br.s) | 51.0 (d) | ||
| 3 | 4.31 (br.s) | 73.8 (d) | 4.28 b | 74.0 (d) | 4.30 b | 73.8 (d) | ||
| 4 | 4.08 (m) | 71.6 (d) | 4.08 b | 71.9 (d) | 4.09 b | 71.7 (d) | ||
| 5a | 1.96 (m) | 31.5 (t) | 1.97 (2H) b | 32.3 (t) | 1.98 b | 32.0 (t) | ||
| 5b | 1.85 (m) | 1.86 b | ||||||
| 6a | 1.74 (m) | 26.1 (t) | 1.73 (m) | 25.5 (t) | 1.60(2H, m) | 25.0 (t) | ||
| 6b | 1.52 (m) | 1.50 (m) | ||||||
| FA | 1 | 175.7 (s) | n.d. | 173.9 (s) | ||||
| 2 | 4.49 b | 71.7 (d) | 4.50 b | 71.6 (d) | 4.51 b | 71.9 (d) | ||
| 3a | 1.98 (m) | 34.9 (t) | 1.98 b | 35.2 (t) | 2.02 (m) | 34.7 (t) | ||
| 3b | 1.90 (m) | 1.90 b | 1.90 (m) | |||||
| 4 | 1.56 (2H, m) | 25.1 (t) | 1.58 (2H, m) b | 25.0 (t) | 1.75 (m) | 26.2 (t) | ||
| 1.52 (m) | ||||||||
| β-Gal | 1 | 4.79 (d, 7.9) | 104.0 (s) | 4.79 (d, 7.9) | 104.5 (d) | 4.74 b | 104.0 (d) | |
| 2 | 4.24 (t, 8.3) | 69.8 (d) | 4.22 b | 70.8 (d) | 4.22 b | 69.7 (d) | ||
| 3 | 4.70 b | 76.7 (d) | 4.70 b | 77.2 (d) | 4.70 b | 76.8 (d) | ||
| 4 | 4.70 (br.s) | 67.7 (d) | 4.70 b | 68.6 (d) | 4.64 b | 67.5 (d) | ||
| 5 | 4.04 (m) | 75.6 (d) | 4.04 b | 76.2 (d) | 3.93 (br.s) | 75.5 (d) | ||
| 6a | 4.13 b | 61.0 (t) | 4.39 b | 61.9 (t) | 4.19 b | 61.3 (t) | ||
| 6b | 4.38 (d, 11.4) | 4.14 b | 4.10 b | |||||
| α-Neu5Ac | 1 | 173.9 (s) | n.d. | 173.7 (s) | ||||
| 2 | 100.7 (s) | n.d. | n.d. | |||||
| 3eq | 3.43 (br.d, 8.0) | 41.6 (t) | 3.43 (d) | n.d. | 3.54 (br.d, 7.9) | 41.5 (t) | ||
| 3ax | 2.28 (t, 11.4) | 2.15 | 2.28 (t, 11.0) | |||||
| 4 | 4.46 b | 68.3 (d) | 4.50 b | 72.8 (d) | 4.45 b | 68.2 (d) | ||
| 5 | 4.48 b | 53.2 (d) | 4.70 b | 50.3 (d) | 4.32 b | 53.2 (d) | ||
| 6 | 4.63 b | 73.8 (d) | 4.69 b | 73.3 (d) | 4.30 b | 71.5 (d) | ||
| 7 | 4.15 b | 68.4 (d) | 4.22 b | 68.5 (d) | 4.27 b | 68.5 (d) | ||
| 8 | 4.07 b | 81.4 (d) | 4.06 b | 82.0 (d) | 4.70 b | 70.6 (d) | ||
| 9 | 4.15 (2H) b | 61.4 (t) | 4.38 b | 61.9 (t) | 4.38 (d, 7.2) | 68.2 (t) | ||
| 4.10 b | 3.88 (d, 8.4) | |||||||
| 10 | 173.7 (s) | n.d. | 173.7 (s) | |||||
| -NHAc | 11 | 2.02 (s) | 22.3 (q) | 2.20 (s) | 23.0 (q) | 2.25 (s) | 22.6 (q) | |
| -OMe | 12 | 3.83 (s) | 58.1 (q) | 3.79 (s) | 58.2 (q) | |||
| α-Gal | 1 | 5.50 (s) | 96.6 (d) | 5.22 (s) | 98.9 (d) | |||
| 2 | 4.43 b | 67.8 (d) | 4.53 b | 68.3 (d) | ||||
| 3 | 4.36 b | 77.0 (d) | 4.53 b | 78.0 (d) | ||||
| 4 | 4.58 b | 69.7 (d) | 4.68 b | 69.5 (d) | ||||
| 5 | 4.36 b | 71.5 (d) | 4.32 b | 71.5 (d) | ||||
| 6 | 4.22 b | 61.9 (t) | 4.14 (2H, m) | 61.3 (t) | ||||
| 4.06 b | ||||||||
| β-Gal | 1 | 5.86 (s) | 110.5 (d) | 5.82 (s) | 110.0 (d) | |||
| 2 | 4.74 b | 82.5 (d) | 4.75 b | 81.8 (d) | ||||
| 3 | 4.68 b | 78.3 (d) | 4.67 b | 77.8 (d) | ||||
| 4 | 4.71 b | 84.8 (d) | 4.72 b | 84.5 (d) | ||||
| 5 | 4.29 b | 71.8 (d) | 4.26 b | 71.6 (d) | ||||
| 6 | 4.06 (2H) b | 63.2 (t) | 4.06 (2H) b | 63.5 (t) | ||||
a Multiplicities and coupling constants are in parentheses; bObscured by other signals; c Assignments were based on HSQC experiment.
Figure 4Partial HMBC spectrum and key HMBC and nOe correlations of PNG-1.
Figure 5The core structure of PNG-2A and key nOe correlations.
Figure 6EI-MS spectrum of the acetate of partially methylated NeuAc derived from 9-linked Neu5Ac and the assignment of its valuable fragment ion peaks.
Figure 7The core structure of PNG-2B and key nOe correlations.
Fatty acid composition of PNG-1, PNG-2A and PNG-2B.
| Fatty acid methyl ester | Composition [%] | ||
|---|---|---|---|
| PNG-1 | PNG-2A | PNG-2B | |
| Methyl 2-hydroxyicosanoate ( | 3.3 | 4.0 | 5.0 |
| Methyl 2-hydroxyhenicosanoate ( | 1.9 | 5.3 | 5.9 |
| Methyl 2-hydroxydocosanoate ( | 40.4 | 39.0 | 39.5 |
| Methyl 2-hydroxytricosanoate ( | 26.4 | 23.5 | 24.0 |
| Methyl 2-hydroxytetracosanoate ( | 28.1 | 28.2 | 25.6 |
Long chain base composition of PNG-1, PNG-2A and PNG-2B.
| Long chain aldehyde | Parent LCB * | Composition [%] | ||
|---|---|---|---|---|
| PNG-1 | PNG-2A | PNG-2B | ||
| tridecanal ( | 14.7 | 13.8 | 19.9 | |
| 12-methyltridecanal ( | 26.8 | 25.5 | 28.3 | |
| Tetradecanal ( | 9.4 | 8.5 | 10.6 | |
| 13-methyltetradecanal ( | 28.9 | 28.3 | 26.1 | |
| 12-methyltetradecanal ( | 4.2 | 4.7 | 4.0 | |
| pentadecanal ( | 7.0 | 12.7 | 5.4 | |
| 13-methylpentadecanal ( | 9.0 | 6.5 | 5.7 | |
* The chain length and number of double bonds are denoted with the prefix “t” to designate trihydroxy bases (phytosphingosine).