Literature DB >> 23195119

Biological databases for behavioral neurobiology.

Erich J Baker1.   

Abstract

Databases are, at their core, abstractions of data and their intentionally derived relationships. They serve as a central organizing metaphor and repository, supporting or augmenting nearly all bioinformatics. Behavioral domains provide a unique stage for contemporary databases, as research in this area spans diverse data types, locations, and data relationships. This chapter provides foundational information on the diversity and prevalence of databases, how data structures support the various needs of behavioral neuroscience analysis and interpretation. The focus is on the classes of databases, data curation, and advanced applications in bioinformatics using examples largely drawn from research efforts in behavioral neuroscience.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 23195119      PMCID: PMC4222244          DOI: 10.1016/B978-0-12-388408-4.00002-2

Source DB:  PubMed          Journal:  Int Rev Neurobiol        ISSN: 0074-7742            Impact factor:   3.230


  41 in total

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6.  BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data.

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Authors:  Benjamin A Shoemaker; Dachuan Zhang; Manoj Tyagi; Ratna R Thangudu; Jessica H Fong; Aron Marchler-Bauer; Stephen H Bryant; Thomas Madej; Anna R Panchenko
Journal:  Nucleic Acids Res       Date:  2011-11-18       Impact factor: 16.971

8.  BioGRID: a general repository for interaction datasets.

Authors:  Chris Stark; Bobby-Joe Breitkreutz; Teresa Reguly; Lorrie Boucher; Ashton Breitkreutz; Mike Tyers
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

9.  The Comparative Toxicogenomics Database facilitates identification and understanding of chemical-gene-disease associations: arsenic as a case study.

Authors:  Allan P Davis; Cynthia G Murphy; Michael C Rosenstein; Thomas C Wiegers; Carolyn J Mattingly
Journal:  BMC Med Genomics       Date:  2008-10-09       Impact factor: 3.063

10.  Autism Genetic Database (AGD): a comprehensive database including autism susceptibility gene-CNVs integrated with known noncoding RNAs and fragile sites.

Authors:  Gregory Matuszek; Zohreh Talebizadeh
Journal:  BMC Med Genet       Date:  2009-09-24       Impact factor: 2.103

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  1 in total

1.  Embracing an integromic approach to tissue biomarker research in cancer: Perspectives and lessons learned.

Authors:  Gerald Li; Peter Bankhead; Philip D Dunne; Paul G O'Reilly; Jacqueline A James; Manuel Salto-Tellez; Peter W Hamilton; Darragh G McArt
Journal:  Brief Bioinform       Date:  2017-07-01       Impact factor: 11.622

  1 in total

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