Literature DB >> 23186206

Consequences of common data analysis inaccuracies in CNS trauma injury basic research.

Darlene A Burke1, Scott R Whittemore, David S K Magnuson.   

Abstract

The development of successful treatments for humans after traumatic brain or spinal cord injuries (TBI and SCI, respectively) requires animal research. This effort can be hampered when promising experimental results cannot be replicated because of incorrect data analysis procedures. To identify and hopefully avoid these errors in future studies, the articles in seven journals with the highest number of basic science central nervous system TBI and SCI animal research studies published in 2010 (N=125 articles) were reviewed for their data analysis procedures. After identifying the most common statistical errors, the implications of those findings were demonstrated by reanalyzing previously published data from our laboratories using the identified inappropriate statistical procedures, then comparing the two sets of results. Overall, 70% of the articles contained at least one type of inappropriate statistical procedure. The highest percentage involved incorrect post hoc t-tests (56.4%), followed by inappropriate parametric statistics (analysis of variance and t-test; 37.6%). Repeated Measures analysis was inappropriately missing in 52.0% of all articles and, among those with behavioral assessments, 58% were analyzed incorrectly. Reanalysis of our published data using the most common inappropriate statistical procedures resulted in a 14.1% average increase in significant effects compared to the original results. Specifically, an increase of 15.5% occurred with Independent t-tests and 11.1% after incorrect post hoc t-tests. Utilizing proper statistical procedures can allow more-definitive conclusions, facilitate replicability of research results, and enable more accurate translation of those results to the clinic.

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Mesh:

Year:  2013        PMID: 23186206      PMCID: PMC3660075          DOI: 10.1089/neu.2012.2704

Source DB:  PubMed          Journal:  J Neurotrauma        ISSN: 0897-7151            Impact factor:   5.269


  29 in total

1.  Replication and reproducibility in spinal cord injury research.

Authors:  Oswald Steward; Phillip G Popovich; W Dalton Dietrich; Naomi Kleitman
Journal:  Exp Neurol       Date:  2011-11-10       Impact factor: 5.330

2.  Significance tests for multiple comparison of proportions, variances, and other statistics.

Authors:  T A RYAN
Journal:  Psychol Bull       Date:  1960-07       Impact factor: 17.737

3.  Presenting data: can you follow a recipe?

Authors:  Gordon B Drummond; Brian D M Tom
Journal:  J Physiol       Date:  2011-11-01       Impact factor: 5.182

4.  Comments on journal guidelines for reporting statistics.

Authors:  John Ludbrook
Journal:  Clin Exp Pharmacol Physiol       Date:  2005-04       Impact factor: 2.557

5.  The content of medical journal Instructions for authors.

Authors:  David L Schriger; Sanjay Arora; Douglas G Altman
Journal:  Ann Emerg Med       Date:  2006-06-06       Impact factor: 5.721

6.  Peer review: a castle built on sand or the bedrock of scientific publishing?

Authors:  Eric Berger
Journal:  Ann Emerg Med       Date:  2006-02       Impact factor: 5.721

7.  Guidelines for reporting statistics in journals published by the American Physiological Society: the sequel.

Authors:  Douglas Curran-Everett; Dale J Benos
Journal:  Adv Physiol Educ       Date:  2007-12       Impact factor: 2.288

8.  Statistics: all together now, one step at a time.

Authors:  Gordon B Drummond; David J Paterson; P McLoughlin; John C McGrath
Journal:  Adv Physiol Educ       Date:  2011-06       Impact factor: 2.288

9.  A call for transparent reporting to optimize the predictive value of preclinical research.

Authors:  Story C Landis; Susan G Amara; Khusru Asadullah; Chris P Austin; Robi Blumenstein; Eileen W Bradley; Ronald G Crystal; Robert B Darnell; Robert J Ferrante; Howard Fillit; Robert Finkelstein; Marc Fisher; Howard E Gendelman; Robert M Golub; John L Goudreau; Robert A Gross; Amelie K Gubitz; Sharon E Hesterlee; David W Howells; John Huguenard; Katrina Kelner; Walter Koroshetz; Dimitri Krainc; Stanley E Lazic; Michael S Levine; Malcolm R Macleod; John M McCall; Richard T Moxley; Kalyani Narasimhan; Linda J Noble; Steve Perrin; John D Porter; Oswald Steward; Ellis Unger; Ursula Utz; Shai D Silberberg
Journal:  Nature       Date:  2012-10-11       Impact factor: 49.962

10.  Error bars in experimental biology.

Authors:  Geoff Cumming; Fiona Fidler; David L Vaux
Journal:  J Cell Biol       Date:  2007-04-09       Impact factor: 10.539

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  7 in total

Review 1.  Does the preclinical evidence for functional remyelination following myelinating cell engraftment into the injured spinal cord support progression to clinical trials?

Authors:  Scott A Myers; Andrew N Bankston; Darlene A Burke; Sujata Saraswat Ohri; Scott R Whittemore
Journal:  Exp Neurol       Date:  2016-04-13       Impact factor: 5.330

Review 2.  Developing a data sharing community for spinal cord injury research.

Authors:  Alison Callahan; Kim D Anderson; Michael S Beattie; John L Bixby; Adam R Ferguson; Karim Fouad; Lyn B Jakeman; Jessica L Nielson; Phillip G Popovich; Jan M Schwab; Vance P Lemmon
Journal:  Exp Neurol       Date:  2017-05-30       Impact factor: 5.330

3.  Minimum information about a spinal cord injury experiment: a proposed reporting standard for spinal cord injury experiments.

Authors:  Vance P Lemmon; Adam R Ferguson; Phillip G Popovich; Xiao-Ming Xu; Diane M Snow; Michihiro Igarashi; Christine E Beattie; John L Bixby
Journal:  J Neurotrauma       Date:  2014-07-11       Impact factor: 5.269

4.  Reflections on Data Sharing Practices in Spinal Cord Injury Research.

Authors:  John C Gensel; Michael B Orr
Journal:  Neuroinformatics       Date:  2021-01-16

Review 5.  Bitters: Time for a New Paradigm.

Authors:  Michael K McMullen; Julie M Whitehouse; Anthony Towell
Journal:  Evid Based Complement Alternat Med       Date:  2015-05-14       Impact factor: 2.629

6.  Topological data analysis for discovery in preclinical spinal cord injury and traumatic brain injury.

Authors:  Jessica L Nielson; Jesse Paquette; Aiwen W Liu; Cristian F Guandique; C Amy Tovar; Tomoo Inoue; Karen-Amanda Irvine; John C Gensel; Jennifer Kloke; Tanya C Petrossian; Pek Y Lum; Gunnar E Carlsson; Geoffrey T Manley; Wise Young; Michael S Beattie; Jacqueline C Bresnahan; Adam R Ferguson
Journal:  Nat Commun       Date:  2015-10-14       Impact factor: 14.919

Review 7.  Cell replacement therapy for central nervous system diseases.

Authors:  Danju Tso; Randall D McKinnon
Journal:  Neural Regen Res       Date:  2015-09       Impact factor: 5.135

  7 in total

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