Literature DB >> 23178121

High degree of coordination and division of labor among subunits in a homomeric ring ATPase.

Gheorghe Chistol1, Shixin Liu, Craig L Hetherington, Jeffrey R Moffitt, Shelley Grimes, Paul J Jardine, Carlos Bustamante.   

Abstract

Ring NTPases of the ASCE superfamily perform a variety of cellular functions. An important question about the operation of these molecular machines is how the ring subunits coordinate their chemical and mechanical transitions. Here, we present a comprehensive mechanochemical characterization of a homomeric ring ATPase-the bacteriophage φ29 packaging motor-a homopentamer that translocates double-stranded DNA in cycles composed of alternating dwells and bursts. We use high-resolution optical tweezers to determine the effect of nucleotide analogs on the cycle. We find that ATP hydrolysis occurs sequentially during the burst and that ADP release is interlaced with ATP binding during the dwell, revealing a high degree of coordination among ring subunits. Moreover, we show that the motor displays an unexpected division of labor: although all subunits of the homopentamer bind and hydrolyze ATP during each cycle, only four participate in translocation, whereas the remaining subunit plays an ATP-dependent regulatory role.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 23178121      PMCID: PMC3652982          DOI: 10.1016/j.cell.2012.10.031

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  45 in total

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Journal:  Biochemistry       Date:  2004-01-20       Impact factor: 3.162

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Authors:  Emmanuel Skordalakes; James M Berger
Journal:  Cell       Date:  2003-07-11       Impact factor: 41.582

Review 3.  Mechanical processes in biochemistry.

Authors:  Carlos Bustamante; Yann R Chemla; Nancy R Forde; David Izhaky
Journal:  Annu Rev Biochem       Date:  2004       Impact factor: 23.643

4.  Evolutionary history and higher order classification of AAA+ ATPases.

Authors:  Lakshminarayan M Iyer; Detlef D Leipe; Eugene V Koonin; L Aravind
Journal:  J Struct Biol       Date:  2004 Apr-May       Impact factor: 2.867

5.  Topoisomerase II drives DNA transport by hydrolyzing one ATP.

Authors:  C L Baird; T T Harkins; S K Morris; J E Lindsley
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

6.  Prohead and DNA-gp3-dependent ATPase activity of the DNA packaging protein gp16 of bacteriophage phi 29.

Authors:  P Guo; C Peterson; D Anderson
Journal:  J Mol Biol       Date:  1987-09-20       Impact factor: 5.469

7.  Structure at 2.8 A resolution of F1-ATPase from bovine heart mitochondria.

Authors:  J P Abrahams; A G Leslie; R Lutter; J E Walker
Journal:  Nature       Date:  1994-08-25       Impact factor: 49.962

8.  Myosin active-site trapping with vanadate ion.

Authors:  C C Goodno
Journal:  Methods Enzymol       Date:  1982       Impact factor: 1.600

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Journal:  J Biol Chem       Date:  2003-02-10       Impact factor: 5.157

10.  Vanadate-induced trapping of nucleotides by purified maltose transport complex requires ATP hydrolysis.

Authors:  S Sharma; A L Davidson
Journal:  J Bacteriol       Date:  2000-12       Impact factor: 3.490

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  65 in total

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Review 2.  Probing the mechanisms of translation with force.

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3.  Continuous allosteric regulation of a viral packaging motor by a sensor that detects the density and conformation of packaged DNA.

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4.  Physical and Functional Characterization of a Viral Genome Maturation Complex.

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5.  Molecular mechanisms of substrate-controlled ring dynamics and substepping in a nucleic acid-dependent hexameric motor.

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Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-16       Impact factor: 11.205

6.  Strong subunit coordination drives a powerful viral DNA packaging motor.

Authors:  Benjamin T Andrews; Carlos Enrique Catalano
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-25       Impact factor: 11.205

7.  Substrate-translocating loops regulate mechanochemical coupling and power production in AAA+ protease ClpXP.

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Journal:  Nat Struct Mol Biol       Date:  2016-09-26       Impact factor: 15.369

8.  The scrunchworm hypothesis: transitions between A-DNA and B-DNA provide the driving force for genome packaging in double-stranded DNA bacteriophages.

Authors:  Stephen C Harvey
Journal:  J Struct Biol       Date:  2014-12-05       Impact factor: 2.867

Review 9.  Mechanisms of DNA Packaging by Large Double-Stranded DNA Viruses.

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Journal:  Annu Rev Virol       Date:  2015-09-10       Impact factor: 10.431

10.  Repulsive DNA-DNA interactions accelerate viral DNA packaging in phage Phi29.

Authors:  Nicholas Keller; Damian delToro; Shelley Grimes; Paul J Jardine; Douglas E Smith
Journal:  Phys Rev Lett       Date:  2014-06-17       Impact factor: 9.161

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