Literature DB >> 23177926

Crystallographic and NMR evidence for flexibility in oligosaccharyltransferases and its catalytic significance.

James Nyirenda1, Shunsuke Matsumoto1, Takashi Saitoh1, Nobuo Maita2, Nobuo N Noda3, Fuyuhiko Inagaki3, Daisuke Kohda4.   

Abstract

Oligosaccharyltransferase (OST) is a membrane-bound enzyme that catalyzes the transfer of an oligosaccharide to an asparagine residue in glycoproteins. It possesses a binding pocket that recognizes Ser and Thr residues at the +2 position in the N-glycosylation consensus, Asn-X-Ser/Thr. We determined the crystal structures of the C-terminal globular domains of the catalytic subunits of two archaeal OSTs. A comparison with previously determined structures identified a segment with remarkable conformational plasticity, induced by crystal contact effects. We characterized its dynamic properties in solution by (15)N NMR relaxation analyses. Intriguingly, the mobile region contains the +2 Ser/Thr-binding pocket. In agreement, the flexibility restriction forced by an engineered disulfide crosslink abolished the enzymatic activity, and its cleavage fully restored activity. These results suggest the necessity of multiple conformational states in the reaction. The dynamic nature of the Ser/Thr pocket could facilitate the efficient scanning of N-glycosylation sequons along nascent polypeptide chains.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 23177926     DOI: 10.1016/j.str.2012.10.011

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  11 in total

1.  Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules.

Authors:  Rei Matsuoka; Atsushi Shimada; Yasuaki Komuro; Yuji Sugita; Daisuke Kohda
Journal:  Protein Sci       Date:  2016-01-13       Impact factor: 6.725

2.  Crystal structures of an archaeal oligosaccharyltransferase provide insights into the catalytic cycle of N-linked protein glycosylation.

Authors:  Shunsuke Matsumoto; Atsushi Shimada; James Nyirenda; Mayumi Igura; Yoshiaki Kawano; Daisuke Kohda
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-14       Impact factor: 11.205

3.  Transmembrane motions of PglB induced by LLO are coupled with EL5 loop conformational changes necessary for OST activity.

Authors:  Hui Sun Lee; Wonpil Im
Journal:  Glycobiology       Date:  2017-08-01       Impact factor: 4.313

Review 4.  N-linked glycosylation in Archaea: a structural, functional, and genetic analysis.

Authors:  Ken F Jarrell; Yan Ding; Benjamin H Meyer; Sonja-Verena Albers; Lina Kaminski; Jerry Eichler
Journal:  Microbiol Mol Biol Rev       Date:  2014-06       Impact factor: 11.056

5.  A catalytically essential motif in external loop 5 of the bacterial oligosaccharyltransferase PglB.

Authors:  Christian Lizak; Sabina Gerber; Daria Zinne; Gaëlle Michaud; Mario Schubert; Fan Chen; Monika Bucher; Tamis Darbre; Renato Zenobi; Jean-Louis Reymond; Kaspar P Locher
Journal:  J Biol Chem       Date:  2013-11-25       Impact factor: 5.157

6.  Tuning the Transglycosylation Reaction of a GH11 Xylanase by a Delicate Enhancement of its Thumb Flexibility.

Authors:  Kim Marneth; Hans van den Elst; Anneloes Cramer-Blok; Jeroen Codee; Hermen S Overkleeft; Johannes M F G Aerts; Marcellus Ubbink; Fredj Ben Bdira
Journal:  Chembiochem       Date:  2021-03-16       Impact factor: 3.164

7.  N-Linked Glycans Are Assembled on Highly Reduced Dolichol Phosphate Carriers in the Hyperthermophilic Archaea Pyrococcus furiosus.

Authors:  Michelle M Chang; Barbara Imperiali; Jerry Eichler; Ziqiang Guan
Journal:  PLoS One       Date:  2015-06-22       Impact factor: 3.240

Review 8.  Structural Insight into the Mechanism of N-Linked Glycosylation by Oligosaccharyltransferase.

Authors:  Smita Mohanty; Bharat P Chaudhary; David Zoetewey
Journal:  Biomolecules       Date:  2020-04-17

9.  Crystal structure of the C-terminal globular domain of the third paralog of the Archaeoglobus fulgidus oligosaccharyltransferases.

Authors:  Shunsuke Matsumoto; Atsushi Shimada; Daisuke Kohda
Journal:  BMC Struct Biol       Date:  2013-07-01

Review 10.  Advances in understanding glycosyltransferases from a structural perspective.

Authors:  Tracey M Gloster
Journal:  Curr Opin Struct Biol       Date:  2014-09-19       Impact factor: 6.809

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