Literature DB >> 23175390

The protein arginine deiminases: Structure, function, inhibition, and disease.

Kevin L Bicker1, Paul R Thompson.   

Abstract

The post-translational modification of histones has significant effects on overall chromatin function. One such modification is citrullination, which is catalyzed by the protein arginine deiminases (PADs), a unique family of enzymes that catalyzes the hydrolysis of peptidyl-arginine to form peptidyl-citrulline on histones, fibrinogen, and other biologically relevant proteins. Overexpression and/or increased PAD activity is observed in several diseases, including rheumatoid arthritis, Alzheimer's disease, multiple sclerosis, lupus, Parkinson's disease, and cancer. This review discusses the important structural and mechanistic characteristics of the PADs, as well as recent investigations into the role of the PADs in increasing disease severity in RA and colitis and the importance of PAD activity in mediating neutrophil extracellular trap formation through chromatin decondensation. Lastly, efforts to develop PAD inhibitors with excellent potency, selectivity and in vivo efficacy are discussed, highlighting the most promising inhibitors.
Copyright © 2012 Wiley Periodicals, Inc.

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Year:  2013        PMID: 23175390      PMCID: PMC3507426          DOI: 10.1002/bip.22127

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  61 in total

1.  On the mechanism of dimethylarginine dimethylaminohydrolase inactivation by 4-halopyridines.

Authors:  Corey M Johnson; Arthur F Monzingo; Zhihong Ke; Dae-Wi Yoon; Thomas W Linsky; Hua Guo; Jon D Robertus; Walter Fast
Journal:  J Am Chem Soc       Date:  2011-06-23       Impact factor: 15.419

Review 2.  Neutrophils in the pathogenesis and manifestations of SLE.

Authors:  Mariana J Kaplan
Journal:  Nat Rev Rheumatol       Date:  2011-09-27       Impact factor: 20.543

3.  Anticancer peptidylarginine deiminase (PAD) inhibitors regulate the autophagy flux and the mammalian target of rapamycin complex 1 activity.

Authors:  Yuji Wang; Pingxin Li; Shu Wang; Jing Hu; Xiangyun Amy Chen; Jianhui Wu; Megan Fisher; Kira Oshaben; Na Zhao; Ying Gu; Dong Wang; Gong Chen; Yanming Wang
Journal:  J Biol Chem       Date:  2012-05-17       Impact factor: 5.157

4.  Suppression of colitis in mice by Cl-amidine: a novel peptidylarginine deiminase inhibitor.

Authors:  Alexander A Chumanevich; Corey P Causey; Bryan A Knuckley; Justin E Jones; Deepak Poudyal; Alena P Chumanevich; Tia Davis; Lydia E Matesic; Paul R Thompson; Lorne J Hofseth
Journal:  Am J Physiol Gastrointest Liver Physiol       Date:  2011-03-17       Impact factor: 4.052

5.  Protein arginine deiminase 4: a target for an epigenetic cancer therapy.

Authors:  Jessica L Slack; Corey P Causey; Paul R Thompson
Journal:  Cell Mol Life Sci       Date:  2010-08-13       Impact factor: 9.261

6.  Autodeimination of protein arginine deiminase 4 alters protein-protein interactions but not activity.

Authors:  Jessica L Slack; Larry E Jones; Monica M Bhatia; Paul R Thompson
Journal:  Biochemistry       Date:  2011-04-20       Impact factor: 3.162

7.  Discovery of peptidylarginine deiminase-4 substrates by protein array: antagonistic citrullination and methylation of human ribosomal protein S2.

Authors:  Qin Guo; Mark T Bedford; Walter Fast
Journal:  Mol Biosyst       Date:  2011-05-16

8.  Citrulline is an essential constituent of antigenic determinants recognized by rheumatoid arthritis-specific autoantibodies.

Authors:  G A Schellekens; B A de Jong; F H van den Hoogen; L B van de Putte; W J van Venrooij
Journal:  J Clin Invest       Date:  1998-01-01       Impact factor: 14.808

9.  Active site cysteine is protonated in the PAD4 Michaelis complex: evidence from Born-Oppenheimer ab initio QM/MM molecular dynamics simulations.

Authors:  Zhihong Ke; Yanzi Zhou; Po Hu; Shenglong Wang; Daiqian Xie; Yingkai Zhang
Journal:  J Phys Chem B       Date:  2009-09-24       Impact factor: 2.991

10.  Global turnover of histone post-translational modifications and variants in human cells.

Authors:  Barry M Zee; Rebecca S Levin; Peter A DiMaggio; Benjamin A Garcia
Journal:  Epigenetics Chromatin       Date:  2010-12-06       Impact factor: 4.954

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  91 in total

1.  From sequence and forces to structure, function, and evolution of intrinsically disordered proteins.

Authors:  Julie D Forman-Kay; Tanja Mittag
Journal:  Structure       Date:  2013-09-03       Impact factor: 5.006

Review 2.  Oxidative Modifications in Tissue Pathology and Autoimmune Disease.

Authors:  Mei-Ling Yang; Hester A Doyle; Steven G Clarke; Kevan C Herold; Mark J Mamula
Journal:  Antioxid Redox Signal       Date:  2017-12-11       Impact factor: 8.401

Review 3.  Protein Arginine Deiminases and Associated Citrullination: Physiological Functions and Diseases Associated with Dysregulation.

Authors:  Erin E Witalison; Paul R Thompson; Lorne J Hofseth
Journal:  Curr Drug Targets       Date:  2015       Impact factor: 3.465

Review 4.  Extracellular traps and macrophages: new roles for the versatile phagocyte.

Authors:  Devin M Boe; Brenda J Curtis; Michael M Chen; Jill A Ippolito; Elizabeth J Kovacs
Journal:  J Leukoc Biol       Date:  2015-04-15       Impact factor: 4.962

Review 5.  Chemical biology of protein arginine modifications in epigenetic regulation.

Authors:  Jakob Fuhrmann; Kathleen W Clancy; Paul R Thompson
Journal:  Chem Rev       Date:  2015-05-13       Impact factor: 60.622

6.  Citrullination mediated by PPAD constrains biofilm formation in P. gingivalis strain 381.

Authors:  Danielle M Vermilyea; Gregory K Ottenberg; Mary E Davey
Journal:  NPJ Biofilms Microbiomes       Date:  2019-02-07       Impact factor: 7.290

Review 7.  Organ Failure Due to Systemic Injury in Acute Pancreatitis.

Authors:  Pramod K Garg; Vijay P Singh
Journal:  Gastroenterology       Date:  2019-02-12       Impact factor: 22.682

8.  Peptidyl arginine deiminase-4 exacerbates ischemic AKI by finding NEMO.

Authors:  May M Rabadi; Sang Jun Han; Mihwa Kim; Vivette D'Agati; H Thomas Lee
Journal:  Am J Physiol Renal Physiol       Date:  2019-04-03

9.  Cellular Activity of New Small Molecule Protein Arginine Deiminase 3 (PAD3) Inhibitors.

Authors:  Haya Jamali; Hasan A Khan; Caroline C Tjin; Jonathan A Ellman
Journal:  ACS Med Chem Lett       Date:  2016-07-20       Impact factor: 4.345

Review 10.  Autoimmunity to citrullinated proteins and the initiation of rheumatoid arthritis.

Authors:  V Michael Holers
Journal:  Curr Opin Immunol       Date:  2013-11-08       Impact factor: 7.486

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