| Literature DB >> 23173982 |
Julie Arsenault1, Olaf Berke, Pascal Michel, André Ravel, Pierre Gosselin.
Abstract
BACKGROUND: Campylobacter is a common cause of bacterial gastro-enteritis characterized by multiple environmental sources and transmission pathways. Ecological studies can be used to reveal important regional characteristics linked to campylobacteriosis risk, but their results can be influenced by the choice of geographical units of analysis. This study was undertaken to compare the associations between the incidence of campylobacteriosis in Quebec, Canada and various environmental characteristics using seven different sets of geographical units.Entities:
Mesh:
Year: 2012 PMID: 23173982 PMCID: PMC3570353 DOI: 10.1186/1471-2334-12-318
Source DB: PubMed Journal: BMC Infect Dis ISSN: 1471-2334 Impact factor: 3.090
Geographical units
| | | |
| Municipalities | 1,063 | Municipalities (as determined by provincial legislation) or an area that is deemed to be equivalent to a municipality for statistical reporting purposes (e.g. cities, cantons). Source: Statistics Canada, 2006. |
| Census consolidated subdivisions | 903 | Grouping of adjacent census subdivisions. Generally the smaller, more urban census subdivisions (towns, villages, etc.) are combined with the surrounding, larger, more rural census subdivision in order to create a geographic level between the census subdivision and the census division. Source: Statistics Canada, 2006. |
| Census divisions | 97 | Groups of neighboring municipalities joined together for the purposes of regional planning and managing common services (such as police or ambulance services). Source: Statistics Canada, 2006. |
| | | |
| CLSC | 155 | Local community service center (CLSC) districts, which are the smallest health-related geographical division in Quebec. CLSC has the mission to provide local front-line health and social services to their population. Source: Quebec’s ministry of health and social services, 2004. |
| | | |
| Watershed | 71 | Drainage area boundaries at the sub-sub-basin level based on classic drainage basins having certain minimum volume of mean annual discharge. Source: Government of Canada, Natural Resources Canada, Canada Centre for Remote Sensing, The Atlas of Canada, 2007. Boundaries of watersheds were adjusted to fit the boundaries of the municipalities to avoid misalignment between population and covariate data (see [ |
| | | |
| Smallest | 1,119 | Units equivalent to municipality or CLSC depending on which is the smaller. |
| Agriculture | 319 | Aggregated adjacent units from the smallest framework based on similar covariate patterns for presence of poultry production, presence of ruminant agricultural production and use of pasture (see [ |
Geographical units for the study of campylobacteriosis spatial distribution in Quebec, Canada.
a Geographical units were hierarchical within the same framework (i.e. administrative, health services and custom), but not between frameworks.
b Number of units are for the studied area.
Definition of risk factors
| Ruminant density per km2 | Density of ruminants (goats, sheep, dairy cattle or beef cattle) per km2 of populated area. |
| Poultry density per km2 | Density of poultry (hens, broilers, or turkeys) per km2 of populated area. |
| Slaughterhouse | Presence of ≥ 1 slaughterhouse handling poultry, cattle, and/or pigs under governmental inspection. |
| Diploma (%) | Percentage of people >15 years with a grade, certificate, or diploma. |
| Population density per km2 | Total number of people living in the area out of the total area in km2. |
| Precipitation (mm) | Average of daily precipitation for the study period. |
| Temperature (°C ) | Average of the maximal and minimal daily temperature for the study period. |
Risk factors tested for their association with campylobacteriosis in Quebec, Canada.
Distribution of risk factors
| | |||||||
|---|---|---|---|---|---|---|---|
| Ruminant density per km2 | | | | | | ||
| >20 | 204 | 204 | 179 | 64 | 10 | 9 | 1 |
| ≤20 | 736 | 721 | 661 | 184 | 97 | 85 | 59 |
| None | 179 | 138 | 63 | 71 | 48 | 3 | 11 |
| Poultry density per km2 | | | | | | ||
| >250 | 185 | 185 | 169 | 46 | 28 | 29 | 12 |
| ≤250 | 132 | 128 | 128 | 54 | 48 | 46 | 28 |
| None | 802 | 750 | 606 | 219 | 79 | 22 | 31 |
| Slaughterhousea | | | | | | ||
| Large poultry | 6 | 6 | 6 | 5 | 5 | 5 | 5 |
| Others | 41 | 41 | 41 | 25 | 32 | 31 | 16 |
| None | 1072 | 1016 | 856 | 289 | 118 | 61 | 50 |
| Diploma (%) | | | | | | ||
| <50 | 209 | 208 | 192 | 37 | 5 | 3 | 14 |
| 50-75 | 724 | 701 | 615 | 209 | 96 | 74 | 51 |
| >75 | 186 | 154 | 96 | 73 | 54 | 20 | 6 |
| Population density per km2 | | | | | | ||
| ≤6 | 207 | 206 | 193 | 20 | n/ab | n/ab | 7 |
| 6-400 | 683 | 681 | 589 | 191 | 47 | 46 | 32 |
| ≥400 | 229 | 176 | 121 | 108 | 108 | 51 | 32 |
| Precipitation (mm) | | | | | | ||
| <2.9 | 138 | 136 | 121 | 40 | 13 | 10 | 13 |
| 2.9-3.1 | 775 | 729 | 607 | 214 | 117 | 69 | 50 |
| >3.1 | 206 | 198 | 175 | 65 | 25 | 18 | 8 |
| Temperature (°C) | | | | | |||
| <3.1 | 191 | 189 | 177 | 55 | 24 | 20 | 32 |
| 3.1-6.9 | 755 | 739 | 639 | 220 | 79 | 66 | 36 |
| >6.9 | 173 | 135 | 87 | 44 | 52 | 11 | 3 |
Distribution of risk factor values for each spatial set of units.
a A total of 52 slaughterhouses were present, handling poultry (n=24), ruminants (n=17) and/or swine (n=23). The “Others” category refers to areas having slaughterhouses handling ruminants or swine and might also include poultry slaughterhouses.
b Not applicable (absence of areas with those values for the specific unit set).
Regression coefficients of CAR models
| | ||||||||
|---|---|---|---|---|---|---|---|---|
| | | |||||||
| Intercept | 34.32 (1.83)* | 35.98 (2.11)* | 35.12 (2.37)* | 39.54 (2.80)* | 36.38 (3.97)* | 23.35 (8.79)* | 16.33 (6.34)* | |
| Ruminant density per km2 (ref.=none) | ||||||||
| >20 | 8.72 (2.04)* | 7.17 (2.14)* | 10.76 (2.57)* | 4.47 (3.21) | 4.75 (5.20) | 17.37 (10.55) | 16.00 (13.10) | 50 |
| ≤20 | 5.44 (1.63)* | 3.25 (1.76) | 4.68 (2.21)* | 3.21 (2.40) | 2.96 (3.41) | 15.05 (8.98) | 8.88 (5.77) | 16 |
| Poultry density per km2 (ref.=none) | ||||||||
| >250 | 3.44 (1.52)* | 2.06 (1.53) | 3.84 (1.50)* | −1.32 (2.75) | 1.24 (3.82) | 4.17 (4.69) | 19.02 (7.55)* | 453 |
| ≤250 | −0.28 (1.62) | −1.05 (1.60) | 1.68 (1.48) | −4.62 (2.48) | −1.15 (3.28) | 1.36 (4.50) | 18.38 (4.59)* | |
| Slaughterhouse (ref.=none) | | | | | | | ||
| Large poultry | 65.90 (6.75)* | 59.24 (6.47)* | 27.81 (5.91)* | 24.68 (7.33)* | 20.42 (5.91)* | 15.99 (6.84)* | 1.96 (7.14) | 312 |
| Others | −1.18 (2.63) | 0.94 (2.53) | −1.40 (2.30) | −2.51 (3.33) | 1.72 (2.96) | 1.52 (3.41) | −5.74 (4.58) | |
| Diploma in % (ref.=50-75) | | | | | | | ||
| <50 | −3.80 (1.42)* | −3.76 (1.41)* | −4.25 (1.34)* | −4.71 (3.09) | −18.16 (6.49)* | −19.68 (9.06)* | −6.37 (4.38) | 423 |
| >75 | −0.20 (1.54) | −1.98 (1.64) | −2.04 (1.78) | −1.72 (2.50) | −4.58 (2.56) | −6.81 (4.13) | 5.24 (6.00) | |
| Population density per km2 (ref.=6-400) | ||||||||
| ≤6 | −2.25 (1.47) | −2.48 (1.49) | −1.28 (1.38) | −6.78 (4.09) | n/ab | n/a | 3.64 (5.66) | |
| >400 | 3.58 (1.50)* | 4.59 (1.52)* | 0.36 (1.53) | 5.69 (2.16)* | 0.91 (2.76) | 2.93 (3.21) | 0.68 (3.75) | 59 |
| Precipitation in mm (ref.=2.9-3.1) | ||||||||
| <2.9 | −3.91 (1.86)* | −3.60 (2.40) | −4.56 (2.07)* | −9.59 (3.49)* | −14.09 (4.52)* | −15.96 (5.39)* | −7.92 (4.51) | 308 |
| >3.1 | 1.33 (1.57) | 1.09 (1.99) | 1.19 (1.81) | 3.18 (2.94) | 8.89 (3.55)* | 5.80 (4.31) | 5.61 (5.35) | |
| Temperature in °C (ref.=3.1-6.9) | ||||||||
| <3.1 | 1.08 (1.65) | −3.45 (2.18) | −1.55 (1.88) | 1.67 (3.08) | 3.14 (3.39) | 7.03 (3.90) | 10.25 (4.05)* | |
| >6.9 | −9.50 (1.92)* | −4.00 (2.57) | −5.32 (2.61)* | −10.42 (3.42)* | −6.47 (3.87) | −6.43 (5.06) | −17.30 (8.73)* | 225 |
| Lambdac | 0.58* | 0.8* | 0.68* | 0.45* | 0.59 | 0.56* | 0.31* | |
| Model r2 | 0.21 | 0.27 | 0.26 | 0.24 | 0.48 | 0.37 | 0.52 | |
Regression coefficients (standard errors) of conditional autoregressive models predicting the annual incidence of campylobacteriosis per 100,000 people in Quebec, Canada, 1996–2006.
a Maximal percentage of variation in statistically significant estimates of regression coefficient based on different geographical units.
b Not applicable (absence of areas with those values for the specific unit set).
c Spatial error parameter adjusting for spatial correlation.
*p<0.05.
Cluster and clustering in residuals
| | |||||||
| | | | | | | ||
| Principal cluster | |||||||
| Meana inside | 79.97 | 74.57 | 77.99 | None | 10.37 | 12.35 | None |
| Meana outside | −0.22 | −0.14 | −0.091 | | −2.49 | −2.6 | |
| Number of units | 3 | 3 | 2 | | 29 | 17 | |
| Area (km2) | 219 | 219 | 203 | | 42993 | 40052 | |
| Locationc | A | A | A | | B | B | |
| P-value | <0.01 | <0.01 | 0.04 | | <0.01 | 0.02 | |
| | | | | | | | |
| Moran’s | |||||||
| Neighbors (km)b | 27 | 29 | 19 | 30 | 18 | 15 | 34 |
| Estimate | −0.06 | −0.02 | −0.11 | −0.06 | −0.02 | 0.09 | 0.02 |
| P-value | 0.99 | 0.98 | 0.99 | 0.90 | 0.63 | 0.34 | 0.42 |
Regression coefficients (standard errors) of conditional autoregressive models predicting the annual incidence of campylobacteriosis per 100,000 people in Quebec, Canada, 1996–2006.
a Mean of residuals.
b Pairs of units with population centers within this distance were considered neighbors.
c A similar letter indicates a similar location for the cluster. See Figure 1 for an indication of the exact cluster location.
Figure 1A-G. Distribution of residuals. Residuals from a CAR model predicting the annual incidence of reported cases of campylobacteriosis per 100,000 people in Quebec (1996–2006) according to various geographical units. Significant clusters (p<0.05) in residuals according to the scan test are illustrated. Classification was done using Jenk’s natural breaks. Dark grey areas represent the unpopulated areas, non-organized territories or incompletely enumerated Indian reserves and settlements within Quebec, whereas light grey shows the frontier area of Quebec.
Figure 2A-B. Predicted incidence of campylobacteriosis. Predicted annual incidence of reported cases of campylobacteriosis per 100,000 people in Quebec (1996–2006) according to a conditional autoregressive (CAR) model at the level of municipality (A) or census division (B). Classification was done using Jenk’s natural breaks. Dark grey areas represent the unpopulated areas, non-organized territories or incompletely enumerated Indian reserves and settlements within Quebec, whereas light grey shows the frontier area of Quebec.