Literature DB >> 23173064

Dye-binding assays for evaluation of the effects of small molecule inhibitors on amyloid (aβ) self-assembly.

Laramie P Jameson1, Nicholas W Smith, Sergei V Dzyuba.   

Abstract

Dye-binding assays, such as those utilizing Congo red and thioflavin T, are among the most widely used tools to probe the aggregation of amyloidogenic biomolecules and for the evaluation of small molecule inhibitors of amyloid aggregation and fibrillization. A number of recent reports have indicated that these dye-binding assays could be prone to false positive effects when assessing inhibitors' potential toward Aβ peptides, species involved in Alzheimer's disease. Specifically, this review focuses on the application of thioflavin T for determining the efficiency of small molecule inhibitors of Aβ aggregation and addresses potential reasons that might be associated with the false positive effects in an effort to increase reliability of dye-binding assays.

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Year:  2012        PMID: 23173064      PMCID: PMC3503347          DOI: 10.1021/cn300076x

Source DB:  PubMed          Journal:  ACS Chem Neurosci        ISSN: 1948-7193            Impact factor:   4.418


  123 in total

1.  Amyloid beta-protein fibrillogenesis. Structure and biological activity of protofibrillar intermediates.

Authors:  D M Walsh; D M Hartley; Y Kusumoto; Y Fezoui; M M Condron; A Lomakin; G B Benedek; D J Selkoe; D B Teplow
Journal:  J Biol Chem       Date:  1999-09-03       Impact factor: 5.157

2.  Novel method for quantitative determination of amyloid fibrils of alpha-synuclein and amyloid beta/A4 protein by using resveratrol.

Authors:  Jung Sun Ahn; Jung-Ho Lee; Je-Hoon Kim; Seung R Paik
Journal:  Anal Biochem       Date:  2007-05-26       Impact factor: 3.365

3.  Phenolic compounds prevent amyloid β-protein oligomerization and synaptic dysfunction by site-specific binding.

Authors:  Kenjiro Ono; Lei Li; Yusaku Takamura; Yuji Yoshiike; Lijun Zhu; Fang Han; Xian Mao; Tokuhei Ikeda; Jun-ichi Takasaki; Hisao Nishijo; Akihiko Takashima; David B Teplow; Michael G Zagorski; Masahito Yamada
Journal:  J Biol Chem       Date:  2012-03-05       Impact factor: 5.157

4.  Endoplasmic reticulum stress enhances γ-secretase activity.

Authors:  Kazunori Ohta; Akihito Mizuno; Shimo Li; Masanori Itoh; Masashi Ueda; Eri Ohta; Yoko Hida; Miao-xing Wang; Manabu Furoi; Yukihiro Tsuzuki; Mitsuaki Sobajima; Yoshimasa Bohmoto; Tatsuya Fukushima; Masuko Kobori; Takashi Inuzuka; Toshiyuki Nakagawa
Journal:  Biochem Biophys Res Commun       Date:  2011-11-16       Impact factor: 3.575

5.  Characterization of Aβ aggregation mechanism probed by congo red.

Authors:  Chih-Ching Wang; Hsien-bin Huang; Huey-Jen Tsay; Ming-Shi Shiao; Wen-Jin Winston Wu; Yi-Chen Cheng; Ta-Hsien Lin
Journal:  J Biomol Struct Dyn       Date:  2012

6.  Anti-amyloidogenic activity of tannic acid and its activity to destabilize Alzheimer's beta-amyloid fibrils in vitro.

Authors:  Kenjiro Ono; Kazuhiro Hasegawa; Hironobu Naiki; Masahito Yamada
Journal:  Biochim Biophys Acta       Date:  2004-11-05

7.  Rifampicin does not prevent amyloid fibril formation by human islet amyloid polypeptide but does inhibit fibril thioflavin-T interactions: implications for mechanistic studies of beta-cell death.

Authors:  Fanling Meng; Peter Marek; Kathryn J Potter; C Bruce Verchere; Daniel P Raleigh
Journal:  Biochemistry       Date:  2008-05-06       Impact factor: 3.162

8.  Inhibition of Alzheimer's amyloid toxicity with a tricyclic pyrone molecule in vitro and in vivo.

Authors:  Hyun-Seok Hong; Sandeep Rana; Lydia Barrigan; Aibin Shi; Yi Zhang; Feimeng Zhou; Lee-Way Jin; Duy H Hua
Journal:  J Neurochem       Date:  2009-02       Impact factor: 5.372

9.  Two-site binding of beta-cyclodextrin to the Alzheimer Abeta(1-40) peptide measured with combined PFG-NMR diffusion and induced chemical shifts.

Authors:  Jens Danielsson; Jüri Jarvet; Peter Damberg; Astrid Gräslund
Journal:  Biochemistry       Date:  2004-05-25       Impact factor: 3.162

10.  Detergent-like interaction of Congo red with the amyloid beta peptide.

Authors:  Christofer Lendel; Benedetta Bolognesi; Anna Wahlström; Christopher M Dobson; Astrid Gräslund
Journal:  Biochemistry       Date:  2010-02-23       Impact factor: 3.162

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  31 in total

1.  Evaluation of [11C]TAZA for amyloid β plaque imaging in postmortem human Alzheimer's disease brain region and whole body distribution in rodent PET/CT.

Authors:  Min-Liang Pan; Meenakshi T Mukherjee; Himika H Patel; Bhavin Patel; Cristian C Constantinescu; M Reza Mirbolooki; Christopher Liang; Jogeshwar Mukherjee
Journal:  Synapse       Date:  2016-02-11       Impact factor: 2.562

2.  Transthyretin-derived peptides as β-amyloid inhibitors.

Authors:  Patricia Y Cho; Gururaj Joshi; Jeffrey A Johnson; Regina M Murphy
Journal:  ACS Chem Neurosci       Date:  2014-04-09       Impact factor: 4.418

3.  Oligomerization Alters Binding Affinity Between Amyloid Beta and a Modulator of Peptide Aggregation.

Authors:  Silvia Hilt; Tatu Rojalin; Tapani Viitala; Artturi Koivuniemi; Alex Bunker; Sebastian Wachsmann Hogiu; Tamás Kálai; Kálmán Hideg; Marjo Yliperttula; John C Voss
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2017-10-10       Impact factor: 4.126

4.  Evaluation of Nanoparticle Tracking for Characterization of Fibrillar Protein Aggregates.

Authors:  Dennis T Yang; Xiaomeng Lu; Yamin Fan; Regina M Murphy
Journal:  AIChE J       Date:  2014-04-01       Impact factor: 3.993

5.  Facile methodology for monitoring amyloid-β fibrillization.

Authors:  Nathan P Cook; Angel A Martí
Journal:  ACS Chem Neurosci       Date:  2012-09-14       Impact factor: 4.418

6.  Aza-BODIPY: improved synthesis and interaction with soluble Aβ1-42 oligomers.

Authors:  Laramie P Jameson; Sergei V Dzyuba
Journal:  Bioorg Med Chem Lett       Date:  2013-01-31       Impact factor: 2.823

Review 7.  Molecular and Clinical Aspects of Protein Aggregation Assays in Neurodegenerative Diseases.

Authors:  Anna Villar-Piqué; Matthias Schmitz; Niccolò Candelise; Salvador Ventura; Franc Llorens; Inga Zerr
Journal:  Mol Neurobiol       Date:  2018-02-10       Impact factor: 5.590

Review 8.  Insulin Formulation Characterization-the Thioflavin T Assays.

Authors:  Morten Schlein
Journal:  AAPS J       Date:  2016-12-20       Impact factor: 4.009

9.  Aromaticity and amyloid formation: effect of π-electron distribution and aryl substituent geometry on the self-assembly of peptides derived from hIAPP(22-29).

Authors:  Adam A Profit; Jayson Vedad; Mohamad Saleh; Ruel Z B Desamero
Journal:  Arch Biochem Biophys       Date:  2014-12-15       Impact factor: 4.013

10.  Tanshinones inhibit amyloid aggregation by amyloid-β peptide, disaggregate amyloid fibrils, and protect cultured cells.

Authors:  Qiuming Wang; Xiang Yu; Kunal Patal; Rundong Hu; Steven Chuang; Ge Zhang; Jie Zheng
Journal:  ACS Chem Neurosci       Date:  2013-03-29       Impact factor: 4.418

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