Literature DB >> 23169563

Unravelling gene expression of complex crop genomes.

R J A Buggs.   

Abstract

Mesh：

Year:  2012        PMID： 23169563      PMCID： PMC3554451          DOI： 10.1038/hdy.2012.61

Source DB:  PubMed          Journal:  Heredity (Edinb)        ISSN： 0018-067X            Impact factor:   3.821


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  19 in total

1.  Proteomic divergence in Arabidopsis autopolyploids and allopolyploids and their progenitors.

Authors:  D W-K Ng; C Zhang; M Miller; Z Shen; S P Briggs; Z J Chen
Journal:  Heredity (Edinb)       Date:  2011-10-19       Impact factor: 3.821

2.  A novel approach for characterizing expression levels of genes duplicated by polyploidy.

Authors:  Joshua A Udall; Jordan M Swanson; Dan Nettleton; Ryan J Percifield; Jonathan F Wendel
Journal:  Genetics       Date:  2006-05-15       Impact factor: 4.562

3.  Transcriptomic shock generates evolutionary novelty in a newly formed, natural allopolyploid plant.

Authors:  Richard J A Buggs; Linjing Zhang; Nicholas Miles; Jennifer A Tate; Lu Gao; Wu Wei; Patrick S Schnable; W Brad Barbazuk; Pamela S Soltis; Douglas E Soltis
Journal:  Curr Biol       Date:  2011-03-17       Impact factor: 10.834

Review 4.  Next-generation hybridization and introgression.

Authors:  A D Twyford; R A Ennos
Journal:  Heredity (Edinb)       Date:  2011-09-07       Impact factor: 3.821

5.  Homoeolog expression bias and expression level dominance in allopolyploid cotton.

Authors:  M-J Yoo; E Szadkowski; J F Wendel
Journal:  Heredity (Edinb)       Date:  2012-11-21       Impact factor: 3.821

6.  Associative transcriptomics of traits in the polyploid crop species Brassica napus.

Authors:  Andrea L Harper; Martin Trick; Janet Higgins; Fiona Fraser; Leah Clissold; Rachel Wells; Chie Hattori; Peter Werner; Ian Bancroft
Journal:  Nat Biotechnol       Date:  2012-08       Impact factor: 54.908

7.  Genomewide nonadditive gene regulation in Arabidopsis allotetraploids.

Authors:  Jianlin Wang; Lu Tian; Hyeon-Se Lee; Ning E Wei; Hongmei Jiang; Brian Watson; Andreas Madlung; Thomas C Osborn; R W Doerge; Luca Comai; Z Jeffrey Chen
Journal:  Genetics       Date:  2005-09-19       Impact factor: 4.562

8.  Molecular genetic and quantitative trait divergence associated with recent homoploid hybrid speciation: a study of Senecio squalidus (Asteraceae).

Authors:  A C Brennan; D Barker; S J Hiscock; R J Abbott
Journal:  Heredity (Edinb)       Date:  2011-08-10       Impact factor: 3.821

9.  Genomic expression dominance in the natural allopolyploid Coffea arabica is massively affected by growth temperature.

Authors:  Amélie Bardil; Juliana Dantas de Almeida; Marie Christine Combes; Philippe Lashermes; Benoît Bertrand
Journal:  New Phytol       Date:  2011-07-28       Impact factor: 10.151

10.  Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing.

Authors:  Keith L Adams; Richard Cronn; Ryan Percifield; Jonathan F Wendel
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-28       Impact factor: 11.205
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  9 in total

1.  Polyploids and hybrids in changing environments: winners or losers in the struggle for adaptation?

Authors:  B K Mable
Journal:  Heredity (Edinb)       Date:  2013-02       Impact factor: 3.821

Review 2.  The legacy of diploid progenitors in allopolyploid gene expression patterns.

Authors:  Richard J A Buggs; Jonathan F Wendel; Jeffrey J Doyle; Douglas E Soltis; Pamela S Soltis; Jeremy E Coate
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-08-05       Impact factor: 6.237

3.  Conserved noncoding sequences conserve biological networks and influence genome evolution.

Authors:  Jianbo Xie; Kecheng Qian; Jingna Si; Liang Xiao; Dong Ci; Deqiang Zhang
Journal:  Heredity (Edinb)       Date:  2018-02-03       Impact factor: 3.821

4.  Physio-molecular traits of contrasting bread wheat genotypes associated with 15N influx exhibiting homeolog expression bias in nitrate transporter genes under different external nitrate concentrations.

Authors:  Amresh Kumar; Sarvendra Kumar; Karnam Venkatesh; Nagendra Kumar Singh; Pranab Kumar Mandal; Subodh Kumar Sinha
Journal:  Planta       Date:  2022-04-13       Impact factor: 4.116

5.  Homeolog expression quantification methods for allopolyploids.

Authors:  Tony C Y Kuo; Masaomi Hatakeyama; Toshiaki Tameshige; Kentaro K Shimizu; Jun Sese
Journal:  Brief Bioinform       Date:  2020-03-23       Impact factor: 11.622

6.  Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis.

Authors:  Satoru Akama; Rie Shimizu-Inatsugi; Kentaro K Shimizu; Jun Sese
Journal:  Nucleic Acids Res       Date:  2014-01-13       Impact factor: 16.971

7.  Genome-wide disruption of gene expression in allopolyploids but not hybrids of rice subspecies.

Authors:  Chunming Xu; Yan Bai; Xiuyun Lin; Na Zhao; Lanjuan Hu; Zhiyun Gong; Jonathan F Wendel; Bao Liu
Journal:  Mol Biol Evol       Date:  2014-02-27       Impact factor: 16.240

8.  Cytonuclear evolution of rubisco in four allopolyploid lineages.

Authors:  Lei Gong; Mischa Olson; Jonathan F Wendel
Journal:  Mol Biol Evol       Date:  2014-07-10       Impact factor: 16.240

9.  Overexpression of the Transcription Factors GmSHN1 and GmSHN9 Differentially Regulates Wax and Cutin Biosynthesis, Alters Cuticle Properties, and Changes Leaf Phenotypes in Arabidopsis.

Authors:  Yangyang Xu; Hanying Wu; Mingming Zhao; Wang Wu; Yinong Xu; Dan Gu
Journal:  Int J Mol Sci       Date:  2016-04-21       Impact factor: 5.923
  9 in total

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