Literature DB >> 22820317

Associative transcriptomics of traits in the polyploid crop species Brassica napus.

Andrea L Harper1, Martin Trick, Janet Higgins, Fiona Fraser, Leah Clissold, Rachel Wells, Chie Hattori, Peter Werner, Ian Bancroft.   

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Year:  2012        PMID： 22820317     DOI： 10.1038/nbt.2302

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  30 in total

1.  Inference of population structure using multilocus genotype data.

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2.  TASSEL: software for association mapping of complex traits in diverse samples.

Authors:  Peter J Bradbury; Zhiwu Zhang; Dallas E Kroon; Terry M Casstevens; Yogesh Ramdoss; Edward S Buckler
Journal:  Bioinformatics       Date:  2007-06-22       Impact factor: 6.937

3.  Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing.

Authors:  Ian Bancroft; Colin Morgan; Fiona Fraser; Janet Higgins; Rachel Wells; Leah Clissold; David Baker; Yan Long; Jinling Meng; Xiaowu Wang; Shengyi Liu; Martin Trick
Journal:  Nat Biotechnol       Date:  2011-07-31       Impact factor: 54.908

4.  Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis.

Authors:  Masami Yokota Hirai; Kenjiro Sugiyama; Yuji Sawada; Takayuki Tohge; Takeshi Obayashi; Akane Suzuki; Ryoichi Araki; Nozomu Sakurai; Hideyuki Suzuki; Koh Aoki; Hideki Goda; Osamu Ishizaki Nishizawa; Daisuke Shibata; Kazuki Saito
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-09       Impact factor: 11.205

5.  Genome-wide association mapping to candidate polymorphism resolution in the unsequenced barley genome.

Authors:  James Cockram; Jon White; Diana L Zuluaga; David Smith; Jordi Comadran; Malcolm Macaulay; Zewei Luo; Mike J Kearsey; Peter Werner; David Harrap; Chris Tapsell; Hui Liu; Peter E Hedley; Nils Stein; Daniela Schulte; Burkhard Steuernagel; David F Marshall; William T B Thomas; Luke Ramsay; Ian Mackay; David J Balding; Robbie Waugh; Donal M O'Sullivan
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-29       Impact factor: 11.205

6.  The genome of the mesopolyploid crop species Brassica rapa.

Authors:  Xiaowu Wang; Hanzhong Wang; Jun Wang; Rifei Sun; Jian Wu; Shengyi Liu; Yinqi Bai; Jeong-Hwan Mun; Ian Bancroft; Feng Cheng; Sanwen Huang; Xixiang Li; Wei Hua; Junyi Wang; Xiyin Wang; Michael Freeling; J Chris Pires; Andrew H Paterson; Boulos Chalhoub; Bo Wang; Alice Hayward; Andrew G Sharpe; Beom-Seok Park; Bernd Weisshaar; Binghang Liu; Bo Li; Bo Liu; Chaobo Tong; Chi Song; Christopher Duran; Chunfang Peng; Chunyu Geng; Chushin Koh; Chuyu Lin; David Edwards; Desheng Mu; Di Shen; Eleni Soumpourou; Fei Li; Fiona Fraser; Gavin Conant; Gilles Lassalle; Graham J King; Guusje Bonnema; Haibao Tang; Haiping Wang; Harry Belcram; Heling Zhou; Hideki Hirakawa; Hiroshi Abe; Hui Guo; Hui Wang; Huizhe Jin; Isobel A P Parkin; Jacqueline Batley; Jeong-Sun Kim; Jérémy Just; Jianwen Li; Jiaohui Xu; Jie Deng; Jin A Kim; Jingping Li; Jingyin Yu; Jinling Meng; Jinpeng Wang; Jiumeng Min; Julie Poulain; Jun Wang; Katsunori Hatakeyama; Kui Wu; Li Wang; Lu Fang; Martin Trick; Matthew G Links; Meixia Zhao; Mina Jin; Nirala Ramchiary; Nizar Drou; Paul J Berkman; Qingle Cai; Quanfei Huang; Ruiqiang Li; Satoshi Tabata; Shifeng Cheng; Shu Zhang; Shujiang Zhang; Shunmou Huang; Shusei Sato; Silong Sun; Soo-Jin Kwon; Su-Ryun Choi; Tae-Ho Lee; Wei Fan; Xiang Zhao; Xu Tan; Xun Xu; Yan Wang; Yang Qiu; Ye Yin; Yingrui Li; Yongchen Du; Yongcui Liao; Yongpyo Lim; Yoshihiro Narusaka; Yupeng Wang; Zhenyi Wang; Zhenyu Li; Zhiwen Wang; Zhiyong Xiong; Zhonghua Zhang
Journal:  Nat Genet       Date:  2011-08-28       Impact factor: 38.330

7.  Use of mRNA-seq to discriminate contributions to the transcriptome from the constituent genomes of the polyploid crop species Brassica napus.

Authors:  Janet Higgins; Andreas Magusin; Martin Trick; Fiona Fraser; Ian Bancroft
Journal:  BMC Genomics       Date:  2012-06-15       Impact factor: 3.969

8.  Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines.

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Journal:  Nature       Date:  2010-03-24       Impact factor: 49.962

9.  A newly-developed community microarray resource for transcriptome profiling in Brassica species enables the confirmation of Brassica-specific expressed sequences.

Authors:  Martin Trick; Foo Cheung; Nizar Drou; Fiona Fraser; Edward K Lobenhofer; Patrick Hurban; Andreas Magusin; Christopher D Town; Ian Bancroft
Journal:  BMC Plant Biol       Date:  2009-05-08       Impact factor: 4.215

10.  Targeted capture and massively parallel sequencing of 12 human exomes.

Authors:  Sarah B Ng; Emily H Turner; Peggy D Robertson; Steven D Flygare; Abigail W Bigham; Choli Lee; Tristan Shaffer; Michelle Wong; Arindam Bhattacharjee; Evan E Eichler; Michael Bamshad; Deborah A Nickerson; Jay Shendure
Journal:  Nature       Date:  2009-08-16       Impact factor: 49.962
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  116 in total

1.  DNA fingerprinting in botany: past, present, future.

Authors:  Hilde Nybom; Kurt Weising; Björn Rotter
Journal:  Investig Genet       Date:  2014-01-03

Review 2.  Applications and challenges of next-generation sequencing in Brassica species.

Authors:  Lijuan Wei; Meili Xiao; Alice Hayward; Donghui Fu
Journal:  Planta       Date:  2013-09-24       Impact factor: 4.116

3.  A genome-wide association study reveals novel elite allelic variations in seed oil content of Brassica napus.

Authors:  Sheng Liu; Chuchuan Fan; Jiana Li; Guangqin Cai; Qingyong Yang; Jian Wu; Xinqi Yi; Chunyu Zhang; Yongming Zhou
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4.  Association mapping of six yield‑related traits in rapeseed (Brassica napus L.).

Authors:  Dongfang Cai; Yingjie Xiao; Wei Yang; Wei Ye; Bo Wang; Muhammad Younas; Jiangsheng Wu; Kede Liu
Journal:  Theor Appl Genet       Date:  2014-01       Impact factor: 5.699

5.  Unravelling gene expression of complex crop genomes.

Authors:  R J A Buggs
Journal:  Heredity (Edinb)       Date:  2012-11-21       Impact factor: 3.821

6.  Nitrogen Use Efficiency Is Mediated by Vacuolar Nitrate Sequestration Capacity in Roots of Brassica napus.

Authors:  Yong-Liang Han; Hai-Xing Song; Qiong Liao; Yin Yu; Shao-Fen Jian; Joe Eugene Lepo; Qiang Liu; Xiang-Min Rong; Chang Tian; Jing Zeng; Chun-Yun Guan; Abdelbagi M Ismail; Zhen-Hua Zhang
Journal:  Plant Physiol       Date:  2016-01-12       Impact factor: 8.340

7.  Transcriptome Association Identifies Regulators of Wheat Spike Architecture.

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8.  Development of genic cleavage markers in association with seed glucosinolate content in canola.

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9.  Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.

Authors:  Baohua Li; Michelle Tang; Ayla Nelson; Hart Caligagan; Xue Zhou; Caitlin Clark-Wiest; Richard Ngo; Siobhan M Brady; Daniel J Kliebenstein
Journal:  Plant Cell       Date:  2018-01-09       Impact factor: 11.277

10.  Identification of a gene controlling variation in the salt tolerance of rapeseed (Brassica napus L.).

Authors:  Hui-Yee Yong; Chunlei Wang; Ian Bancroft; Feng Li; Xiaoming Wu; Hiroyasu Kitashiba; Takeshi Nishio
Journal:  Planta       Date:  2015-04-29       Impact factor: 4.116
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