Literature DB >> 23166562

Assembly and Stability of α-Helical Membrane Proteins.

Matthias Heyden1, J Alfredo Freites, Martin B Ulmschneider, Stephen H White, Douglas J Tobias.   

Abstract

Grease to grease - this is how one might begin to describe the tendency of hydrophobic stretches in protein amino acid sequences to form transmembrane domains. While this simple rule contains a lot of truth, the mechanisms of membrane protein folding, the insertion of hydrophobic protein domains into the lipid bilayer, and the apparent existence of highly polar residues in some proteins in the hydrophobic membrane core are subjects of lively debate - an indication that many details remain unresolved. Here, we present a historical survey of recent insights from experiments and computational studies into the rules and mechanisms of α-helical membrane protein assembly and stability.

Entities:  

Year:  2012        PMID: 23166562      PMCID: PMC3500387          DOI: 10.1039/C2SM25402F

Source DB:  PubMed          Journal:  Soft Matter        ISSN: 1744-683X            Impact factor:   3.679


  46 in total

1.  Determination of membrane-insertion free energies by molecular dynamics simulations.

Authors:  James Gumbart; Benoît Roux
Journal:  Biophys J       Date:  2012-02-21       Impact factor: 4.033

2.  Characterizing molecular interactions in different bacteriorhodopsin assemblies by single-molecule force spectroscopy.

Authors:  K Tanuj Sapra; Hüseyin Besir; Dieter Oesterhelt; Daniel J Muller
Journal:  J Mol Biol       Date:  2005-11-17       Impact factor: 5.469

3.  Multipass membrane protein structure prediction using Rosetta.

Authors:  Vladimir Yarov-Yarovoy; Jack Schonbrun; David Baker
Journal:  Proteins       Date:  2006-03-01

4.  Bacteriorhodopsin folds into the membrane against an external force.

Authors:  Max Kessler; Kay E Gottschalk; Harald Janovjak; Daniel J Muller; Hermann E Gaub
Journal:  J Mol Biol       Date:  2006-01-06       Impact factor: 5.469

5.  Hydrophobically stabilized open state for the lateral gate of the Sec translocon.

Authors:  Bin Zhang; Thomas F Miller
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-04       Impact factor: 11.205

6.  Side-chain hydrophobicity scale derived from transmembrane protein folding into lipid bilayers.

Authors:  C Preston Moon; Karen G Fleming
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-23       Impact factor: 11.205

7.  Influences of solvent water on protein folding: free energies of solvation of cis and trans peptides are nearly identical.

Authors:  A Radzicka; L Pedersen; R Wolfenden
Journal:  Biochemistry       Date:  1988-06-14       Impact factor: 3.162

8.  Free-energy cost for translocon-assisted insertion of membrane proteins.

Authors:  James Gumbart; Christophe Chipot; Klaus Schulten
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-11       Impact factor: 11.205

9.  Is arginine charged in a membrane?

Authors:  Libo Li; Igor Vorobyov; Alexander D MacKerell; Toby W Allen
Journal:  Biophys J       Date:  2007-11-02       Impact factor: 4.033

10.  Solvation energies of amino acid side chains and backbone in a family of host-guest pentapeptides.

Authors:  W C Wimley; T P Creamer; S H White
Journal:  Biochemistry       Date:  1996-04-23       Impact factor: 3.162

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  13 in total

1.  Thermal unfolding of a mammalian pentameric ligand-gated ion channel proceeds at consecutive, distinct steps.

Authors:  Menno B Tol; Cédric Deluz; Gherici Hassaine; Alexandra Graff; Henning Stahlberg; Horst Vogel
Journal:  J Biol Chem       Date:  2012-12-29       Impact factor: 5.157

2.  α-Helical protein absorption at post-traumatic epileptic foci monitored by Fourier transform infrared mapping.

Authors:  Siyang Xiang; Dong Zhao; Hongxia Hao; X U Wang; Ling Li; Tiantong Yang
Journal:  J Biosci       Date:  2020       Impact factor: 1.826

3.  Folding-Degradation Relationship of a Membrane Protein Mediated by the Universally Conserved ATP-Dependent Protease FtsH.

Authors:  Yiqing Yang; Ruiqiong Guo; Kristen Gaffney; Miyeon Kim; Shaima Muhammednazaar; Wei Tian; Boshen Wang; Jie Liang; Heedeok Hong
Journal:  J Am Chem Soc       Date:  2018-03-21       Impact factor: 15.419

4.  Site-Specific Peptide Probes Detect Buried Water in a Lipid Membrane.

Authors:  Jennifer C Flanagan; Carlos R Baiz
Journal:  Biophys J       Date:  2019-03-19       Impact factor: 4.033

5.  Folding and Misfolding of Human Membrane Proteins in Health and Disease: From Single Molecules to Cellular Proteostasis.

Authors:  Justin T Marinko; Hui Huang; Wesley D Penn; John A Capra; Jonathan P Schlebach; Charles R Sanders
Journal:  Chem Rev       Date:  2019-01-04       Impact factor: 60.622

6.  Membrane activity of two short Trp-rich amphipathic peptides.

Authors:  José C Bozelli; Jenny Yune; Xiangli Dang; Jayaram Lakshmaiah Narayana; Guangshun Wang; Richard M Epand
Journal:  Biochim Biophys Acta Biomembr       Date:  2020-03-24       Impact factor: 3.747

7.  Improving the topology prediction of α-helical transmembrane proteins with deep transfer learning.

Authors:  Lei Wang; Haolin Zhong; Zhidong Xue; Yan Wang
Journal:  Comput Struct Biotechnol J       Date:  2022-04-20       Impact factor: 6.155

Review 8.  Why do proteins aggregate? "Intrinsically insoluble proteins" and "dark mediators" revealed by studies on "insoluble proteins" solubilized in pure water.

Authors:  Jianxing Song
Journal:  F1000Res       Date:  2013-03-22

9.  The interaction between amyloid-β peptides and anionic lipid membranes containing cholesterol and melatonin.

Authors:  Hannah Dies; Laura Toppozini; Maikel C Rheinstädter
Journal:  PLoS One       Date:  2014-06-10       Impact factor: 3.240

10.  Identification of Specific Effect of Chloride on the Spectral Properties and Structural Stability of Multiple Extracellular Glutamic Acid Mutants of Bacteriorhodopsin.

Authors:  Tzvetana Lazarova; Krzysztof Mlynarczyk; Enric Querol; Boris Tenchov; Slawomir Filipek; Esteve Padrós
Journal:  PLoS One       Date:  2016-09-22       Impact factor: 3.240

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