Literature DB >> 23161379

Progress toward the application of molecular force spectroscopy to DNA sequencing.

Peng Cheng1, Piercen M Oliver, Michael J Barrett, Dmitri Vezenov.   

Abstract

Many recent advances in DNA sequencing have taken advantage of single-molecule techniques using fluorescently labeled oligonucleotides as the principal mode of detection. However, in spite of the successes of fluorescent-based sequencers, avoidance of labeled nucleotides could substantially reduce the costs of sequencing. This article discusses the development of an alternative sequencing method in which unlabeled DNA can be manipulated directly on a massively parallel scale using single-molecule force spectroscopy. We combine a wide-field optical detection technique (evanescent field excitation) with one of two methods of applying force in parallel, magnetic or dielectrophoretic tweezers, to attain near single-base sensitivity in the double-stranded character of DNA. This article will discuss the developments of such a single-molecule force spectroscopy technique as a potential technology for genome sequencing.
© 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Year:  2012        PMID: 23161379      PMCID: PMC3815542          DOI: 10.1002/elps.201200351

Source DB:  PubMed          Journal:  Electrophoresis        ISSN: 0173-0835            Impact factor:   3.535


  42 in total

1.  Highly parallel magnetic tweezers by targeted DNA tethering.

Authors:  Iwijn De Vlaminck; Thomas Henighan; Marijn T J van Loenhout; Indriati Pfeiffer; Julius Huijts; Jacob W J Kerssemakers; Allard J Katan; Anja van Langen-Suurling; Emile van der Drift; Claire Wyman; Cees Dekker
Journal:  Nano Lett       Date:  2011-10-27       Impact factor: 11.189

2.  Heterobifunctional modification of DNA for conjugation to solid surfaces.

Authors:  Hana I Lim; Piercen M Oliver; Jutta Marzillier; Dmitri V Vezenov
Journal:  Anal Bioanal Chem       Date:  2010-04-28       Impact factor: 4.142

3.  Subpiconewton dynamic force spectroscopy using magnetic tweezers.

Authors:  M Kruithof; F Chien; M de Jager; J van Noort
Journal:  Biophys J       Date:  2007-12-07       Impact factor: 4.033

4.  Sequence-specific detection of individual DNA polymerase complexes in real time using a nanopore.

Authors:  Seico Benner; Roger J A Chen; Noah A Wilson; Robin Abu-Shumays; Nicholas Hurt; Kate R Lieberman; David W Deamer; William B Dunbar; Mark Akeson
Journal:  Nat Nanotechnol       Date:  2007-10-28       Impact factor: 39.213

5.  Imaginary magnetic tweezers for massively parallel surface adhesion spectroscopy.

Authors:  Ye Yang; Randall M Erb; Benjamin J Wiley; Stefan Zauscher; Benjamin B Yellen
Journal:  Nano Lett       Date:  2011-03-18       Impact factor: 11.189

6.  Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.

Authors:  S B Smith; Y Cui; C Bustamante
Journal:  Science       Date:  1996-02-09       Impact factor: 47.728

7.  A new method for the covalent attachment of DNA to a surface for single-molecule studies.

Authors:  Daniel J Schlingman; Andrew H Mack; Simon G J Mochrie; Lynne Regan
Journal:  Colloids Surf B Biointerfaces       Date:  2010-11-09       Impact factor: 5.268

8.  Quantitative high-resolution sensing of DNA hybridization using magnetic tweezers with evanescent illumination.

Authors:  Piercen M Oliver; Jin Seon Park; Dmitri Vezenov
Journal:  Nanoscale       Date:  2010-11-19       Impact factor: 7.790

Review 9.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

10.  Microspotting streptavidin and double-stranded DNA arrays on gold for high-throughput studies of protein-DNA interactions by surface plasmon resonance microscopy.

Authors:  Jennifer S Shumaker-Parry; M Hadi Zareie; Ruedi Aebersold; Charles T Campbell
Journal:  Anal Chem       Date:  2004-02-15       Impact factor: 6.986

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  2 in total

Review 1.  The evolution of nanopore sequencing.

Authors:  Yue Wang; Qiuping Yang; Zhimin Wang
Journal:  Front Genet       Date:  2015-01-07       Impact factor: 4.599

Review 2.  An NGS Workflow Blueprint for DNA Sequencing Data and Its Application in Individualized Molecular Oncology.

Authors:  Jian Li; Aarif Mohamed Nazeer Batcha; Björn Grüning; Ulrich R Mansmann
Journal:  Cancer Inform       Date:  2016-04-10
  2 in total

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