Literature DB >> 23159672

Development of a reverse transcription loop-mediated isothermal amplification assay for rapid detection of grass carp reovirus.

Qing-Li Zhang1, Yi Yan, Jin-Yu Shen, Gui-Jie Hao, Cheng-Yin Shi, Qin-Tao Wang, Hong Liu, Jie Huang.   

Abstract

Reverse transcription loop-mediated isothermal amplification (RT-LAMP) is a gene amplification method that can amplify the RNA template by isothermal incubation. This paper reports a rapid and sensitive RT-LAMP method which was developed for the detection of grass carp reovirus (GCRV). The present study concluded the optimal conditions for the LAMP reaction of which the Mg(2+) concentrations in the reaction mixtures, the incubation temperature, and the reaction time are at 8mM, 64°C, and 30 min, respectively. The analytical sensitivity of the RT-LAMP method was revealed as low as 7 copies of viral templates and 100-fold more sensitive than the published RT-PCR method. A visual inspection of in-tube LAMP products stained with a DNA fluorescent dye demonstrated that the positive and negative reactions exhibit distinct and different colors in daylight, which means that gel electrophoresis is not necessary to judge the positive or negative results. As the application of the method is rapid, easy, and no complicated instrument required, the GCRV-RT-LAMP method established in this study has great potential for the detection of GCRV in both the laboratory and the farm.
Copyright © 2012 Elsevier B.V. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 23159672     DOI: 10.1016/j.jviromet.2012.11.005

Source DB:  PubMed          Journal:  J Virol Methods        ISSN: 0166-0934            Impact factor:   2.014


  9 in total

1.  Improved detection limit in rapid detection of human enterovirus 71 and coxsackievirus A16 by a novel reverse transcription-isothermal multiple-self-matching-initiated amplification assay.

Authors:  Xiong Ding; Kai Nie; Lei Shi; Yong Zhang; Li Guan; Dan Zhang; Shunxiang Qi; Xuejun Ma
Journal:  J Clin Microbiol       Date:  2014-03-19       Impact factor: 5.948

Review 2.  Insights into the antiviral immunity against grass carp (Ctenopharyngodon idella) reovirus (GCRV) in grass carp.

Authors:  Youliang Rao; Jianguo Su
Journal:  J Immunol Res       Date:  2015-02-09       Impact factor: 4.818

3.  Inhibitor analysis revealed that clathrin-mediated endocytosis is involed in cellular entry of type III grass carp reovirus.

Authors:  Hao Wang; Weisha Liu; Meng Sun; Dubo Chen; Lingbing Zeng; Liqun Lu; Jing Xie
Journal:  Virol J       Date:  2018-05-24       Impact factor: 4.099

4.  Unusual isothermal multimerization and amplification by the strand-displacing DNA polymerases with reverse transcription activities.

Authors:  Guoping Wang; Xiong Ding; Jiumei Hu; Wenshuai Wu; Jingjing Sun; Ying Mu
Journal:  Sci Rep       Date:  2017-10-24       Impact factor: 4.379

5.  Detection of melon necrotic spot virus by one-step reverse transcription loop-mediated isothermal amplification assay.

Authors:  Ning Qiao; Huijie Dai; Jie Liu; Xiaoping Zhu; Jintang Li; Dezhen Zhang; Yongguang Liu
Journal:  PLoS One       Date:  2020-03-05       Impact factor: 3.240

6.  The destiny of the resistance/susceptibility against GCRV is controlled by epigenetic mechanisms in CIK cells.

Authors:  Xueying Shang; Chunrong Yang; Quanyuan Wan; Youliang Rao; Jianguo Su
Journal:  Sci Rep       Date:  2017-07-03       Impact factor: 4.379

7.  Development and evaluation of reverse transcription loop-mediated isothermal amplification assay for the detection of the fathead minnow nidovirus.

Authors:  Qingli Zhang; Isaac Standish; Andrew D Winters; Corey Puzach; Rachel Ulferts; John Ziebuhr; Mohamed Faisal
Journal:  J Virol Methods       Date:  2014-03-01       Impact factor: 2.014

8.  Reverse transcription loop-mediated isothermal amplification for rapid and quantitative assay of covert mortality nodavirus in shrimp.

Authors:  Qingli Zhang; Shuang Liu; Haolin Yang; Luoluo Zhu; Xiaoyuan Wan; Xiaoping Li; Jie Huang
Journal:  J Invertebr Pathol       Date:  2015-09-09       Impact factor: 2.841

9.  Development of a loop-mediated isothermal amplification assay for the detection and quantification of epizootic epitheliotropic disease virus (salmonid herpesvirus-3).

Authors:  Qingli Zhang; Megan Shavalier; Isaac Standish; Gavin W Glenney; Thomas P Loch; Mohamed Faisal
Journal:  J Virol Methods       Date:  2018-11-13       Impact factor: 2.014

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.