Literature DB >> 23154979

Spliceosome activation: U4 is the path, stem I is the goal, and Prp8 is the keeper. Let's cheer for the ATPase Brr2!

Klaus H Nielsen1, Jonathan P Staley.   

Abstract

During pre-mRNA splicing, the spliceosome is activated for catalysis by unwinding base-paired U4/U6 small nuclear RNAs, a step that must be precisely timed. We know that unwinding requires the ATPase Brr2, but the mechanism and regulation of unwinding have been understood poorly. In the November 1, 2012, issue of Genes & Development, Hahn and colleagues (pp. 2408-2421) and Mozaffari-Jovin and colleagues (pp. 2422-2434) defined a pathway for U4/U6 unwinding. Moreover, Mozaffari-Jovin and colleagues suggested a mechanism for regulating Brr2.

Entities:  

Year:  2012        PMID: 23154979      PMCID: PMC3505815          DOI: 10.1101/gad.207514.112

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  47 in total

1.  In vitro reconstitution of yeast splicing with U4 snRNA reveals multiple roles for the 3' stem-loop.

Authors:  Amy J Hayduk; Martha R Stark; Stephen D Rader
Journal:  RNA       Date:  2012-03-12       Impact factor: 4.942

2.  Escherichia coli DbpA is a 3' --> 5' RNA helicase.

Authors:  Camille M Diges; Olke C Uhlenbeck
Journal:  Biochemistry       Date:  2005-05-31       Impact factor: 3.162

3.  Repositioning of the reaction intermediate within the catalytic center of the spliceosome.

Authors:  Maria M Konarska; Josep Vilardell; Charles C Query
Journal:  Mol Cell       Date:  2006-02-17       Impact factor: 17.970

4.  Crystal structure of the beta-finger domain of Prp8 reveals analogy to ribosomal proteins.

Authors:  Kui Yang; Lingdi Zhang; Tao Xu; Annie Heroux; Rui Zhao
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-08       Impact factor: 11.205

Review 5.  Spliceosome structure and function.

Authors:  Cindy L Will; Reinhard Lührmann
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-07-01       Impact factor: 10.005

6.  The human U5-200kD DEXH-box protein unwinds U4/U6 RNA duplices in vitro.

Authors:  B Laggerbauer; T Achsel; R Lührmann
Journal:  Proc Natl Acad Sci U S A       Date:  1998-04-14       Impact factor: 11.205

7.  Suppressors of a cold-sensitive mutation in yeast U4 RNA define five domains in the splicing factor Prp8 that influence spliceosome activation.

Authors:  A N Kuhn; D A Brow
Journal:  Genetics       Date:  2000-08       Impact factor: 4.562

8.  Evidence that U2/U6 helix I promotes both catalytic steps of pre-mRNA splicing and rearranges in between these steps.

Authors:  Melissa A Mefford; Jonathan P Staley
Journal:  RNA       Date:  2009-05-20       Impact factor: 4.942

9.  The ribosomal translocase homologue Snu114p is involved in unwinding U4/U6 RNA during activation of the spliceosome.

Authors:  Cornelia Bartels; Christine Klatt; Reinhard Lührmann; Patrizia Fabrizio
Journal:  EMBO Rep       Date:  2002-08-16       Impact factor: 8.807

10.  Structure of yeast Argonaute with guide RNA.

Authors:  Kotaro Nakanishi; David E Weinberg; David P Bartel; Dinshaw J Patel
Journal:  Nature       Date:  2012-06-20       Impact factor: 49.962

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  6 in total

1.  Protein localisation by electron microscopy reveals the architecture of the yeast spliceosomal B complex.

Authors:  Norbert Rigo; Chengfu Sun; Patrizia Fabrizio; Berthold Kastner; Reinhard Lührmann
Journal:  EMBO J       Date:  2015-11-18       Impact factor: 11.598

Review 2.  RNA helicase proteins as chaperones and remodelers.

Authors:  Inga Jarmoskaite; Rick Russell
Journal:  Annu Rev Biochem       Date:  2014-03-12       Impact factor: 23.643

3.  A multi-step model for facilitated unwinding of the yeast U4/U6 RNA duplex.

Authors:  Margaret L Rodgers; Allison L Didychuk; Samuel E Butcher; David A Brow; Aaron A Hoskins
Journal:  Nucleic Acids Res       Date:  2016-08-02       Impact factor: 16.971

4.  U5 snRNA Interactions With Exons Ensure Splicing Precision.

Authors:  Olga V Artemyeva-Isman; Andrew C G Porter
Journal:  Front Genet       Date:  2021-07-02       Impact factor: 4.599

5.  Prp8 retinitis pigmentosa mutants cause defects in the transition between the catalytic steps of splicing.

Authors:  Megan Mayerle; Christine Guthrie
Journal:  RNA       Date:  2016-03-11       Impact factor: 4.942

6.  A mutation in a splicing factor that causes retinitis pigmentosa has a transcriptome-wide effect on mRNA splicing.

Authors:  Paul K Korir; Lisa Roberts; Raj Ramesar; Cathal Seoighe
Journal:  BMC Res Notes       Date:  2014-06-27
  6 in total

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