Literature DB >> 23150586

Bioinspired multivalent DNA network for capture and release of cells.

Weian Zhao1, Cheryl H Cui, Suman Bose, Dagang Guo, Chong Shen, Wesley P Wong, Ken Halvorsen, Omid C Farokhzad, Grace Sock Leng Teo, Joseph A Phillips, David M Dorfman, Rohit Karnik, Jeffrey M Karp.   

Abstract

Capture and isolation of flowing cells and particulates from body fluids has enormous implications in diagnosis, monitoring, and drug testing, yet monovalent adhesion molecules used for this purpose result in inefficient cell capture and difficulty in retrieving the captured cells. Inspired by marine creatures that present long tentacles containing multiple adhesive domains to effectively capture flowing food particulates, we developed a platform approach to capture and isolate cells using a 3D DNA network comprising repeating adhesive aptamer domains that extend over tens of micrometers into the solution. The DNA network was synthesized from a microfluidic surface by rolling circle amplification where critical parameters, including DNA graft density, length, and sequence, could readily be tailored. Using an aptamer that binds to protein tyrosine kinase-7 (PTK7) that is overexpressed on many human cancer cells, we demonstrate that the 3D DNA network significantly enhances the capture efficiency of lymphoblast CCRF-CEM cells over monovalent aptamers and antibodies, yet maintains a high purity of the captured cells. When incorporated in a herringbone microfluidic device, the 3D DNA network not only possessed significantly higher capture efficiency than monovalent aptamers and antibodies, but also outperformed previously reported cell-capture microfluidic devices at high flow rates. This work suggests that 3D DNA networks may have broad implications for detection and isolation of cells and other bioparticles.

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Year:  2012        PMID: 23150586      PMCID: PMC3511714          DOI: 10.1073/pnas.1211234109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

1.  Stretching single stranded DNA, a model polyelectrolyte.

Authors:  M-N Dessinges; B Maier; Y Zhang; M Peliti; D Bensimon; V Croquette
Journal:  Phys Rev Lett       Date:  2002-11-22       Impact factor: 9.161

2.  Targeted cell-cell interactions by DNA nanoscaffold-templated multivalent bispecific aptamers.

Authors:  Xiaowei Liu; Hao Yan; Yan Liu; Yung Chang
Journal:  Small       Date:  2011-05-02       Impact factor: 13.281

3.  Aptamer-mediated efficient capture and release of T lymphocytes on nanostructured surfaces.

Authors:  Li Chen; Xueli Liu; Bin Su; Jing Li; Lei Jiang; Dong Han; Shutao Wang
Journal:  Adv Mater       Date:  2011-08-22       Impact factor: 30.849

4.  Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.

Authors:  S B Smith; Y Cui; C Bustamante
Journal:  Science       Date:  1996-02-09       Impact factor: 47.728

5.  Rolling replication of short DNA circles.

Authors:  A Fire; S Q Xu
Journal:  Proc Natl Acad Sci U S A       Date:  1995-05-09       Impact factor: 11.205

6.  Highly efficient capture of circulating tumor cells by using nanostructured silicon substrates with integrated chaotic micromixers.

Authors:  Shutao Wang; Kan Liu; Jian Liu; Zeta T-F Yu; Xiaowen Xu; Libo Zhao; Tom Lee; Eun Kyung Lee; Jean Reiss; Yi-Kuen Lee; Leland W K Chung; Jiaoti Huang; Matthew Rettig; David Seligson; Kumaran N Duraiswamy; Clifton K-F Shen; Hsian-Rong Tseng
Journal:  Angew Chem Int Ed Engl       Date:  2011-03-04       Impact factor: 15.336

7.  Prognostic significance and modalities of flow cytometric minimal residual disease detection in childhood acute lymphoblastic leukemia.

Authors:  Michael N Dworzak; Gertraud Fröschl; Dieter Printz; Georg Mann; Ulrike Pötschger; Nora Mühlegger; Gerhard Fritsch; Helmut Gadner
Journal:  Blood       Date:  2002-03-15       Impact factor: 22.113

8.  Polymerase chain reaction-based detection of minimal residual disease in acute lymphoblastic leukemia predicts relapse after allogeneic BMT.

Authors:  J Radich; P Ladne; T Gooley
Journal:  Biol Blood Marrow Transplant       Date:  1995-11       Impact factor: 5.742

9.  A multivalent DNA aptamer specific for the B-cell receptor on human lymphoma and leukemia.

Authors:  Prabodhika R Mallikaratchy; Alessandro Ruggiero; Jeffrey R Gardner; Vitaly Kuryavyi; William F Maguire; Mark L Heaney; Michael R McDevitt; Dinshaw J Patel; David A Scheinberg
Journal:  Nucleic Acids Res       Date:  2010-10-28       Impact factor: 16.971

10.  Physicochemical effects of aldehydes on the human erythrocyte.

Authors:  P S Vassar; J M Hards; D E Brooks; B Hagenberger; G V Seaman
Journal:  J Cell Biol       Date:  1972-06       Impact factor: 10.539

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  48 in total

Review 1.  Materials and microfluidics: enabling the efficient isolation and analysis of circulating tumour cells.

Authors:  Joshua M Jackson; Małgorzata A Witek; Joyce W Kamande; Steven A Soper
Journal:  Chem Soc Rev       Date:  2017-07-17       Impact factor: 54.564

2.  Multivalent DNA nanospheres for enhanced capture of cancer cells in microfluidic devices.

Authors:  Weian Sheng; Tao Chen; Weihong Tan; Z Hugh Fan
Journal:  ACS Nano       Date:  2013-07-15       Impact factor: 15.881

3.  RNAi-microsponges form through self-assembly of the organic and inorganic products of transcription.

Authors:  Kevin E Shopsowitz; Young Hoon Roh; Zhou J Deng; Stephen W Morton; Paula T Hammond
Journal:  Small       Date:  2014-04-24       Impact factor: 13.281

Review 4.  Rare cell isolation and analysis in microfluidics.

Authors:  Yuchao Chen; Peng Li; Po-Hsun Huang; Yuliang Xie; John D Mai; Lin Wang; Nam-Trung Nguyen; Tony Jun Huang
Journal:  Lab Chip       Date:  2014-02-21       Impact factor: 6.799

Review 5.  Strategies to develop endogenous stem cell-recruiting bioactive materials for tissue repair and regeneration.

Authors:  Settimio Pacelli; Sayantani Basu; Jonathan Whitlow; Aparna Chakravarti; Francisca Acosta; Arushi Varshney; Saman Modaresi; Cory Berkland; Arghya Paul
Journal:  Adv Drug Deliv Rev       Date:  2017-07-19       Impact factor: 15.470

Review 6.  Engineering artificial machines from designable DNA materials for biomedical applications.

Authors:  Hao Qi; Guoyou Huang; Yulong Han; Xiaohui Zhang; Yuhui Li; Belinda Pingguan-Murphy; Tian Jian Lu; Feng Xu; Lin Wang
Journal:  Tissue Eng Part B Rev       Date:  2015-02-09       Impact factor: 6.389

7.  SpyLigase peptide-peptide ligation polymerizes affibodies to enhance magnetic cancer cell capture.

Authors:  Jacob O Fierer; Gianluca Veggiani; Mark Howarth
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-17       Impact factor: 11.205

Review 8.  Recent advances in nanotechnology-based detection and separation of circulating tumor cells.

Authors:  Ja Hye Myung; Kevin A Tam; Sin-jung Park; Ashley Cha; Seungpyo Hong
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2015-08-21

Review 9.  NanoVelcro rare-cell assays for detection and characterization of circulating tumor cells.

Authors:  Yu Jen Jan; Jie-Fu Chen; Yazhen Zhu; Yi-Tsung Lu; Szu Hao Chen; Howard Chung; Matthew Smalley; Yen-Wen Huang; Jiantong Dong; Li-Ching Chen; Hsiao-Hua Yu; James S Tomlinson; Shuang Hou; Vatche G Agopian; Edwin M Posadas; Hsian-Rong Tseng
Journal:  Adv Drug Deliv Rev       Date:  2018-03-15       Impact factor: 15.470

Review 10.  Aptamers: versatile molecular recognition probes for cancer detection.

Authors:  Hongguang Sun; Weihong Tan; Youli Zu
Journal:  Analyst       Date:  2016-01-21       Impact factor: 4.616

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