Literature DB >> 23148324

State-of-the-art technology in modern computer-aided drug design.

Georgios A Dalkas1, Dimitrios Vlachakis, Dimosthenis Tsagkrasoulis, Anastasia Kastania, Sophia Kossida.   

Abstract

The quest for small drug-like compounds that selectively inhibit the function of biological targets has always been a major focus in the pharmaceutical industry and in academia as well. High-throughput screening of compound libraries requires time, cost and resources. Therefore, the use of alternative methods is necessary for facilitating lead discovery. Computational techniques that dock small molecules into macromolecular targets and predict the affinity and activity of the small molecule are widely used in drug design and discovery, and have become an integral part of the industrial and academic research. In this review, we present an overview of some state-of-the-art technologies in modern drug design that have been developed for expediting the search for novel drug candidates.

Keywords:  3D printing; 3D virtual environments; computer-aided drug design; flexible docking; haptics

Mesh:

Year:  2012        PMID: 23148324     DOI: 10.1093/bib/bbs063

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  12 in total

Review 1.  Microbiome Hijacking Towards an Integrative Pest Management Pipeline.

Authors:  Vasiliki Lila Koumandou; Louis Papageorgiou; Spyridon Champeris Tsaniras; Aegli Papathanassopoulou; Marianna Hagidimitriou; Nikos Cosmidis; Dimitrios Vlachakis
Journal:  Adv Exp Med Biol       Date:  2020       Impact factor: 2.622

2.  Antibody Clustering Using a Machine Learning Pipeline that Fuses Genetic, Structural, and Physicochemical Properties.

Authors:  Louis Papageorgiou; Dimitris Maroulis; George P Chrousos; Elias Eliopoulos; Dimitrios Vlachakis
Journal:  Adv Exp Med Biol       Date:  2020       Impact factor: 2.622

3.  The inhibitory mechanism of aurintricarboxylic acid targeting serine/threonine phosphatase Stp1 in Staphylococcus aureus: insights from molecular dynamics simulations.

Authors:  Ting-Ting Liu; Teng Yang; Mei-Na Gao; Kai-Xian Chen; Song Yang; Kun-Qian Yu; Hua-Liang Jiang
Journal:  Acta Pharmacol Sin       Date:  2019-02-22       Impact factor: 6.150

4.  Ebola virus epidemic: a deliberate accident?

Authors:  Styliani Loukatou; Paraskevas Fakourelis; Louis Papageorgiou; Vasileios Megalooikonomou; Sophia Kossida; Dimitrios Vlachakis
Journal:  J Mol Biochem       Date:  2014

5.  Drugena: A Fully Automated Immunoinformatics Platform for the Design of Antibody-Drug Conjugates Against Neurodegenerative Diseases.

Authors:  Louis Papageorgiou; Eleni Papakonstantinou; Constantinos Salis; Eleytheria Polychronidou; Marianna Hagidimitriou; Dimitris Maroulis; Elias Eliopoulos; Dimitrios Vlachakis
Journal:  Adv Exp Med Biol       Date:  2020       Impact factor: 2.622

6.  Structural Study of the DNA: Clock/Bmal1 Complex Provides Insights for the Role of Cortisol, hGR, and HPA Axis in Stress Management and Sleep Disorders.

Authors:  Sofia Raftopoulou; Nicolas C Nicolaides; Louis Papageorgiou; Anastasia Amfilochiou; Spyros G Zakinthinos; Potamitis George; Elias Eliopoulos; George P Chrousos; Dimitrios Vlachakis
Journal:  Adv Exp Med Biol       Date:  2020       Impact factor: 2.622

Review 7.  Olive Oil Polyphenols in Neurodegenerative Pathologies.

Authors:  Constantinos Salis; Louis Papageorgiou; Eleni Papakonstantinou; Marianna Hagidimitriou; Dimitrios Vlachakis
Journal:  Adv Exp Med Biol       Date:  2020       Impact factor: 2.622

8.  A series of Notch3 mutations in CADASIL; insights from 3D molecular modelling and evolutionary analyses.

Authors:  Dimitrios Vlachakis; Spyridon Champeris Tsaniras; Katerina Ioannidou; Louis Papageorgiou; Marc Baumann; Sophia Kossida
Journal:  J Mol Biochem       Date:  2014

9.  Introducing Thetis: a comprehensive suite for event detection in molecular dynamics.

Authors:  Eleni Picasi; Athanasios Tartas; Vasileios Megalooikonomou; Dimitrios Vlachakis
Journal:  J Mol Biochem       Date:  2018-10-03

10.  DrugOn: a fully integrated pharmacophore modeling and structure optimization toolkit.

Authors:  Dimitrios Vlachakis; Paraskevas Fakourelis; Vasileios Megalooikonomou; Christos Makris; Sophia Kossida
Journal:  PeerJ       Date:  2015-01-13       Impact factor: 2.984

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