Literature DB >> 23144423

Genome sequence of Pedobacter arcticus sp. nov., a sea ice bacterium isolated from tundra soil.

Ye Yin1, Guidong Yue, Qiang Gao, Zhiyong Wang, Fang Peng, Chengxiang Fang, Xu Yang, Li Pan.   

Abstract

Pedobacter arcticus sp. nov. was originally isolated from tundra soil collected from Ny-Ålesund, in the Arctic region of Norway. It is a Gram-negative bacterium which shows bleb-shaped appendages on the cell surface. Here, we report the draft annotated genome sequence of Pedobacter arcticus sp. nov., which belongs to the genus Pedobacter.

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Year:  2012        PMID： 23144423      PMCID： PMC3497505          DOI： 10.1128/JB.01655-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  13 in total

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Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

4.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

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Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

6.  Classification of heparinolytic bacteria into a new genus, Pedobacter, comprising four species: Pedobacter heparinus comb. nov., Pedobacter piscium comb. nov., Pedobacter africanus sp. nov. and Pedobacter saltans sp. nov. proposal of the family Sphingobacteriaceae fam. nov.

Authors:  P L Steyn; P Segers; M Vancanneyt; P Sandra; K Kersters; J J Joubert
Journal:  Int J Syst Bacteriol       Date:  1998-01

7.  Pedobacter roseus sp. nov., isolated from a hypertrophic pond, and emended description of the genus Pedobacter.

Authors:  Chung Yeon Hwang; Dong Han Choi; Byung Cheol Cho
Journal:  Int J Syst Evol Microbiol       Date:  2006-08       Impact factor: 2.747

8.  Pedobacter caeni sp. nov., a novel species isolated from a nitrifying inoculum.

Authors:  Bram Vanparys; Kim Heylen; Liesbeth Lebbe; Paul De Vos
Journal:  Int J Syst Evol Microbiol       Date:  2005-05       Impact factor: 2.747

9.  KEGG for linking genomes to life and the environment.

Authors:  Minoru Kanehisa; Michihiro Araki; Susumu Goto; Masahiro Hattori; Mika Hirakawa; Masumi Itoh; Toshiaki Katayama; Shuichi Kawashima; Shujiro Okuda; Toshiaki Tokimatsu; Yoshihiro Yamanishi
Journal:  Nucleic Acids Res       Date:  2007-12-12       Impact factor: 16.971

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
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  2 in total

1.  Whole genome sequencing and antibiotic diffusion assays, provide new insight on drug resistance in the genus Pedobacter.

Authors:  Ingvild Falkum Ullmann; Anders Benteson Nygaard; Hege Smith Tunsjø; Colin Charnock
Journal:  FEMS Microbiol Ecol       Date:  2020-06-01       Impact factor: 4.194

2.  Draft Genome Sequence of Pedobacter sp. Strain V48, Isolated from a Coastal Sand Dune in the Netherlands.

Authors:  Adam S Bitzer; Paolina Garbeva; Mark W Silby
Journal:  Genome Announc       Date:  2014-02-27
  2 in total

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